CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47317	Soybean	cytosol	96.47	96.47
KRH61652	Soybean	cytosol	42.66	81.35
KRH52312	Soybean	cytosol	74.73	79.71
GSMUA_Achr10P...	Banana	cytosol	69.02	75.82
GSMUA_Achr4P12780_001	Banana	cytosol	73.1	75.56
KRH15637	Soybean	cytosol	68.48	74.34
Os02t0180000-01	Rice	cytosol, plasma membrane	70.38	71.55
KRH05380	Soybean	golgi	68.48	70.79
Os06t0651600-01	Rice	cytosol	70.38	70.38
EES04637	Sorghum	cytosol	68.21	69.92
EER90135	Sorghum	cytosol	69.02	69.4
Zm00001d036710_P001	Maize	extracellular	68.48	69.04
HORVU6Hr1G029160.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	71.2	68.95
TraesCS6D01G137200.1	Wheat	golgi	71.2	66.84
TraesCS6B01G176200.4	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	70.92	65.91
TraesCS6A01G147900.4	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	70.92	65.91
VIT_09s0018g01140.t01	Wine grape	nucleus	63.86	65.64
TraesCS7A01G504800.1	Wheat	cytosol	70.65	65.33
HORVU7Hr1G113110.1	Barley	cytosol	70.65	65.33
KRH61653	Soybean	cytosol	23.91	64.71
TraesCS7D01G492000.1	Wheat	nucleus	70.65	63.26
TraesCS7B01G411900.1	Wheat	cytosol	70.11	62.77
Zm00001d046828_P003	Maize	cytosol	68.48	62.69
Zm00001d015504_P004	Maize	extracellular	68.21	62.59
Solyc12g042570.1.1	Tomato	nucleus	56.79	62.57
Zm00001d046831_P002	Maize	cytosol	67.93	61.43
Zm00001d018815_P001	Maize	cytosol, mitochondrion, peroxisome	17.39	58.18
GSMUA_Achr6P03990_001	Banana	plastid	69.02	56.07
Zm00001d047200_P003	Maize	golgi, mitochondrion, peroxisome	23.64	54.72
Zm00001d039151_P002	Maize	cytosol, mitochondrion, peroxisome	16.58	50.83
KRH62979	Soybean	cytosol	12.23	27.95
KRH39122	Soybean	cytosol	24.18	27.38
KRH61828	Soybean	cytosol	26.9	26.76
KRH52505	Soybean	cytosol	26.9	26.76
KRH12874	Soybean	cytosol	26.36	25.59
KRH76528	Soybean	cytosol	25.82	25.4
KRH37886	Soybean	cytosol	26.09	25.2
KRH20243	Soybean	cytosol	26.09	25.07
KRH69165	Soybean	cytosol	26.9	25.0
KRH03568	Soybean	cytosol	25.82	24.8
KRH31749	Soybean	cytosol	26.63	24.75
KRH02420	Soybean	cytosol	25.54	24.74
KRH51582	Soybean	cytosol	25.82	24.68
KRH50630	Soybean	cytosol	25.54	24.35
KRH28935	Soybean	nucleus	24.73	24.33
KRH60899	Soybean	cytosol	21.74	24.24
KRH36917	Soybean	cytosol	26.09	23.7
KRH48594	Soybean	cytosol, peroxisome, plastid	14.95	22.63
KRH71677	Soybean	cytosol	24.73	13.81

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:100499713	MapMan:18.4.24.2.9	Gene3D:3.60.40.10	EMBL:ACUP02004942
EnsemblPlantsGene:GLYMA_08G220100	GO:GO:0003674	GO:GO:0003824	GO:GO:0004721	GO:GO:0004722	GO:GO:0005488
GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0043169	GO:GO:0046872	UniProt:I1KVN9	InterPro:IPR001932	InterPro:IPR036457
EnsemblPlants:KRH44580	ProteinID:KRH44580	ProteinID:KRH44580.1	PFAM:PF00481	InterPro:PP2C	InterPro:PP2C_BS
InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	ScanProsite:PS01032	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF385
SMART:SM00332	SUPFAM:SSF81606	UniParc:UPI00023390FD	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:-:17879595..17886268

Molecular Weight (calculated)

40419.8 Da

IEP (calculated)

4.978

GRAVY (calculated)

-0.410

Length

368 amino acids

Sequence
(BLAST)

001: MIMFLMGIYL STPKTEKASE DGENDKLRFG LSSMQGWRAT MEDAHAAHPC LDESTSYFGV YDGHGGKAVS KFCAKYLHLQ VLKSEAYLAG DLGTSLQKSF
101: LRMDEMMRGQ RGWRELAILG DKIEKLSGML EGFIWSPRSS EANDRVDDWA FEEGPHSDFT GPNSGSTACV AVVRGNKLVV ANAGDSRCVL SRKGQAHNLS
201: KDHKPELEAE KDRILKAGGF IQVGRVNGSL NLARAIGDME FKQNKYLPAE KQIVTADPDI TSVELCDDDE FLVIACDGIW DCMSSQQLVD FIHQQLKTEN
301: KLSAVCERVF DRCLAPTAGG EGCDNMTMIL IQFKKPSSSP DASSVMNQPQ SSAQSSEADR SSETVESK

Best Arabidopsis Sequence Match ( AT2G25070.1 )
(BLAST)

001: MGTYLSSPKT EKLSEDGEND KLRFGLSSMQ GWRATMEDAH AAILDLDDKT SFFGVYDGHG GKVVAKFCAK YLHQQVISNE AYKTGDVETS LRRAFFRMDD
101: MMQGQRGWRE LAVLGDKMNK FSGMIEGFIW SPRSGDTNNQ PDSWPLEDGP HSDFTGPTSG CTACVALIKD KKLFVANAGD SRCVISRKSQ AYNLSKDHKP
201: DLEVEKERIL KAGGFIHAGR INGSLNLTRA IGDMEFKQNK FLPSEKQMVT ADPDINTIDL CDDDDFLVVA CDGIWDCMSS QELVDFIHEQ LKSETKLSTV
301: CEKVVDRCLA PDTATGEGCD NMTIILVQFK KPNPSETEPE DSKPEPSEDE PSSSS

Arabidopsis Description

PPC4-2Probable protein phosphatase 2C 21 [Source:UniProtKB/Swiss-Prot;Acc:O81716]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.