Factsheet for PGSC0003DMT400060425

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	mitochondrion, nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g055040.2.1	Tomato	plasma membrane	97.56	97.56
PGSC0003DMT400029873	Potato	plasma membrane	80.11	80.11
VIT_14s0036g00430.t01	Wine grape	golgi	72.61	70.88
KRG92718	Soybean	endoplasmic reticulum	68.29	67.28
KRH68773	Soybean	endoplasmic reticulum	69.42	67.15
KRG97021	Soybean	endoplasmic reticulum	68.86	66.61
GSMUA_Achr5P18580_001	Banana	plasma membrane	67.54	65.81
GSMUA_Achr11P...	Banana	plasma membrane	64.92	64.43
AT5G18480.1	Thale cress	golgi	64.35	63.87
CDX88935	Canola	plasma membrane	63.6	63.48
Bra006462.1-P	Field mustard	plasma membrane	63.6	63.36
CDX70822	Canola	plasma membrane	63.23	63.35
CDY02625	Canola	plasma membrane	62.29	62.29
Bra040140.1-P	Field mustard	extracellular, golgi, plasma membrane	63.6	62.09
CDY58112	Canola	plasma membrane	61.73	62.08
Bra023678.1-P	Field mustard	plasma membrane	61.91	61.91
CDY29996	Canola	extracellular, plasma membrane	63.41	61.9
CDY21129	Canola	extracellular, golgi, plasma membrane	63.41	61.9
KRH34122	Soybean	plasma membrane	59.1	61.05
TraesCS6B01G257400.2	Wheat	plasma membrane	54.97	61.04
EES11117	Sorghum	plasma membrane	61.35	61.01
HORVU2Hr1G089320.8	Barley	cytosol	54.97	60.91
Zm00001d025865_P001	Maize	plasma membrane	60.79	60.45
TraesCS2A01G381700.1	Wheat	plasma membrane	61.35	60.44
TraesCS2B01G399000.1	Wheat	plasma membrane	60.98	60.19
TraesCS2D01G378200.1	Wheat	plasma membrane	60.98	60.19
Os02t0624400-01	Rice	golgi	60.6	59.05
TraesCS6A01G223900.1	Wheat	plasma membrane	59.85	58.96
TraesCS6D01G211500.1	Wheat	plasma membrane	59.85	58.96
HORVU6Hr1G058670.11	Barley	endoplasmic reticulum, golgi	47.47	58.43
Os04t0517400-01	Rice	cytosol, plasma membrane	27.95	50.34
PGSC0003DMT400012126	Potato	plasma membrane	18.39	20.59
PGSC0003DMT400030982	Potato	plasma membrane	16.7	19.14
PGSC0003DMT400048888	Potato	nucleus	16.7	17.66
PGSC0003DMT400048884	Potato	golgi	16.14	15.5
PGSC0003DMT400063796	Potato	golgi	18.76	15.43
PGSC0003DMT400020678	Potato	golgi	16.32	15.43
PGSC0003DMT400020680	Potato	golgi	16.32	15.03

Protein Annotations

EntrezGene:102597070	Gene3D:3.90.550.10	MapMan:5.4.13.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016757	InterPro:Glyco_trans_8	InterPro:IPR029044
UniProt:M1C5U2	InterPro:Nucleotide-diphossugar_trans	PFAM:PF01501	EnsemblPlantsGene:PGSC0003DMG400023500	PGSC:PGSC0003DMG400023500	EnsemblPlants:PGSC0003DMT400060425
PANTHER:PTHR11183	PANTHER:PTHR11183:SF65	SUPFAM:SSF53448	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000295CB2B
RefSeq:XP_006346008.1	SEG:seg	:	:	:	:

Description

Glycogenin [Source:PGSC_GENE;Acc:PGSC0003DMG400023500]

Coordinates

chr5:+:50744354..50752421

Molecular Weight (calculated)

60353.9 Da

IEP (calculated)

9.001

GRAVY (calculated)

0.156

Length

533 amino acids

Sequence
(BLAST)

001: MKEIDFRYGF LFFLMFLSSN WVIGAIKSQS TEEAYVTLLY GDEFLLGVRV LGKSIRNTGS TKDMVVLVSD GVSQYANDLL RADGWIVEKI SLLSNPNQVR
101: PKRFWGVYTK LKVFNMTKYK KVVYLDADTI VVKSIEDLFK CGKFCANLKH SERLNSGVMV IEPSDEVFKD MMSKVTTLPS YTGGDQGFLN SYYAGFANAR
201: VYEPNQPLDV LNSRKVPEME RLSTLYNADV GLYMLANKWM VDEKELRVIH YTLGPLKPWD WWTSWLLKPV DVWQNVRVRL QESLPGTGGG KNPRDELLVK
301: FLFLVPLLLM VISYYKSCLQ TRSLFDHIRQ LYYKIRAGGV LAYSSVPSST ILSDQQPKVP AFLGGISVCV CFAAVLVSLG LSLVIIPRQV MPWTGLLLMY
401: EWTFTLLFLQ FGSYLYLVYQ WGKAVANQAG QFRADSTSLD HESGKGHQRQ QSYCDIAACY YGLGMAFLAI LAPALPSIFG ITALFLRLGL MVVGGLVLLS
501: FMTYAAEHLS IRSFTRGFEE KDMHRSRSIC FLC

Best Arabidopsis Sequence Match ( AT5G18480.1 )
(BLAST)

001: MVRLKTSLWV LLLALVSIQL NGSFGSESSK VAYVTLLYGD EFLLGVRVLG KSIRDTGSTK DMVALVSDGV SDYSKKLLKA DGWKVEKISL LANPNQVHPT
101: RFWGVYTKLK IFNMTDYKKV VYLDADTIVV KNIEDLFKCS KFCANLKHSE RLNSGVMVVE PSEALFNDMM RKVKTLSSYT GGDQGFLNSY YPDFPNARVF
201: DPSVTPEVLK TRPVPAMERL STLYNADVGL YMLANKWMVD DSKLHVIHYT LGPLKPWDWW TAWLVKPVDA WHSIRVKLEE TLPGTGGGSN QHDELVVKFL
301: FLLPLCALLF CIYRSIQGRE GSLCWSSFSN QIRYLYYKVR SNGTLGYGGV STMSPSYQPH SGNAQSKVPQ HLGAVSVVVC FTAVLLSLGI SFAIVPRQIM
401: PWTGLVLVYE WTFTIFFLLF GVFLLFVHQH GKRIAIQSES SSLDDSAKVH QRAGGSCDVT TLYYGLGMAF LAIAAVSLPY ILGITALFTR LGLMVGLAII
501: LAAFMTYASE HLAVRWFLKG LEDRRDTTRS NSLCFLC

Arabidopsis Description

IPUT1Inositol phosphorylceramide glucuronosyltransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWB7]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.