Factsheet for PGSC0003DMT400020678

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
cytosol 2
extracellular 4
golgi 6
plasma membrane 4
endoplasmic reticulum 4
vacuole 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g078980.2.1	Tomato	golgi	96.1	96.1
PGSC0003DMT400020680	Potato	golgi	71.81	69.95
VIT_18s0001g10580.t01	Wine grape	golgi	65.6	62.71
KRH05688	Soybean	golgi	62.41	59.46
KRH15352	Soybean	golgi	62.59	59.43
KRH61283	Soybean	golgi	60.99	57.82
Bra011433.1-P	Field mustard	golgi	59.75	57.12
CDY45037	Canola	endoplasmic reticulum, golgi, plasma membrane	58.87	56.08
Bra034558.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	58.69	55.91
CDX75345	Canola	golgi, plastid	59.4	55.56
CDX68968	Canola	golgi	59.22	55.12
AT4G33330.2	Thale cress	endoplasmic reticulum, golgi, plastid	58.16	52.4
TraesCS4B01G301200.1	Wheat	golgi	51.06	48.57
TraesCS4D01G299500.1	Wheat	golgi	50.89	48.24
TraesCS4A01G004100.1	Wheat	golgi	50.35	47.97
Zm00001d027938_P001	Maize	plasma membrane	50.18	47.72
EER95378	Sorghum	golgi, plastid	50.35	46.94
Os03t0184300-02	Rice	golgi	51.06	46.91
GSMUA_Achr6P10110_001	Banana	endoplasmic reticulum	43.26	46.48
GSMUA_Achr3P01740_001	Banana	endoplasmic reticulum, golgi	44.86	46.34
PGSC0003DMT400048888	Potato	nucleus	40.96	45.83
GSMUA_Achr2P22380_001	Banana	extracellular, golgi, plastid	45.74	43.58
PGSC0003DMT400048884	Potato	golgi	39.54	40.18
CDY28291	Canola	nucleus	16.13	39.39
PGSC0003DMT400063796	Potato	golgi	43.09	37.5
CDY28292	Canola	golgi	45.21	34.51
CDX99330	Canola	cytosol	7.8	30.56
PGSC0003DMT400060425	Potato	plasma membrane	15.43	16.32
PGSC0003DMT400012126	Potato	plasma membrane	13.65	16.18
PGSC0003DMT400029873	Potato	plasma membrane	14.54	15.38
PGSC0003DMT400030982	Potato	plasma membrane	12.59	15.27

Protein Annotations

EntrezGene:102593375	MapMan:21.2.2.1.2.1	Gene3D:3.90.550.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009834	GO:GO:0009987	GO:GO:0015020	GO:GO:0016020
GO:GO:0016021	GO:GO:0016740	GO:GO:0016757	GO:GO:0045492	InterPro:GUX	InterPro:Glyco_trans_8
InterPro:IPR029044	UniProt:M1ADX8	InterPro:Nucleotide-diphossugar_trans	PFAM:PF01501	EnsemblPlantsGene:PGSC0003DMG400008015	PGSC:PGSC0003DMG400008015
EnsemblPlants:PGSC0003DMT400020678	PANTHER:PTHR11183	PANTHER:PTHR11183:SF44	SUPFAM:SSF53448	TMHMM:TMhelix	UniParc:UPI00029663E7
RefSeq:XP_015167556.1	SEG:seg	:	:	:	:

Description

Glycogenin [Source:PGSC_GENE;Acc:PGSC0003DMG400008015]

Coordinates

chr4:-:68278699..68281749

Molecular Weight (calculated)

66089.5 Da

IEP (calculated)

9.104

GRAVY (calculated)

-0.331

Length

564 amino acids

Sequence
(BLAST)

001: MKSFPSKALI IKINLVFLVC FLIAYAALLH WQLSSLYHEY SKSTIRCTSC ECHHKVEEEP IFVNGTNAIL KKMVRHKKPS FVKEIMGRGM KIGMVNMEDE
101: DVSEWRVHGQ IIKVQFQKVS ELLEWDDLFP GQIDEELEEM DRRQTCPEIP MPHFYGYNNM DIIVVKLPCN YPQEGWKRDV FRLQVHLVAA NLAVNRKKGK
201: NGKMKLIFLS KCIPMMEIFR CKELKKREGD WWYYEPNMAK LAQKISLPIG SCKLALTLRE KGMKKVYNIS NVQSREAYAT VLHSSGKYVC GAITLAQSLL
301: RTGTRRDLVL LLDDTIPEPK RDALVKAGWK LRLIERIRNA RADKNSYNKY NYSKFRLWQL TDYEKVVFID ADIIVLRNID ILFLFPQLSA TGNAGSIFNS
401: GVMVIEPSNC TFNMLMQHTK DIISYNGGDQ GFLNEIFVWW HRLPRRVNFF KNFENLNEVS AKNQLFEADP PQLYAVHYLG LKPWVCYRDY DCNWDVGYLH
501: VYASDIAHRT WWKIHDTMDE NLQKFCGLSK QRKIELYFSR KEAEEMGLKD EHWRINVTDP RRLA

Best Arabidopsis Sequence Match ( AT4G33330.2 )
(BLAST)

001: MTIMTMIMKM APSKSALIRF NLVLLGFSFL LYTAIFFHPS SSVYFSSGAS FVGCSFRDCT PKVVRGVKMQ ELVEENEINK KDLLTASNQT KLEAPSFMEE
101: ILTRGLGKTK IGMVNMEECD LTNWKRYGET VHIHFERVSK LFKWQDLFPE WIDEEEETEV PTCPEIPMPD FESLEKLDLV VVKLPCNYPE EGWRREVLRL
201: QVNLVAANLA AKKGKTDWRW KSKVLFWSKC QPMIEIFRCD DLEKREADWW LYRPEVVRLQ QRLSLPVGSC NLALPLWAPQ GVDKVYDLTK IEAETKRPKR
301: EAYVTVLHSS ESYVCGAITL AQSLLQTNTK RDLILLHDDS ISITKLRALA AAGWKLRRII RIRNPLAEKD SYNEYNYSKF RLWQLTDYDK VIFIDADIIV
401: LRNLDLLFHF PQMSATGNDV WIYNSGIMVI EPSNCTFTTI MSQRSEIVSY NGGDQGYLNE IFVWWHRLPR RVNFLKNFWS NTTKERNIKN NLFAAEPPQV
501: YAVHYLGWKP WLCYRDYDCN YDVDEQLVYA SDAAHVRWWK VHDSMDDALQ KFCRLTKKRR TEINWERRKA RLRGSTDYHW KINVTDPRRR PNINFRMVSA
601: QLEKCLAFDE KGIKVINLAE EMENTL

Arabidopsis Description

PGSIP3plant glycogenin-like starch initiation protein 3 [Source:TAIR;Acc:AT4G33330]
SUBAcon: [golgi,endoplasmic reticulum,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.