CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

nucleus 1
plastid 1
mitochondrion 2
golgi 3
extracellular 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	golgi, mitochondrion, nucleus, plasma membrane, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034558.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	63.46	79.22
CDY45037	Canola	endoplasmic reticulum, golgi, plasma membrane	63.33	79.05
CDX75345	Canola	golgi, plastid	60.62	74.3
CDX68968	Canola	golgi	59.68	72.77
AT4G33330.2	Thale cress	endoplasmic reticulum, golgi, plastid	56.7	66.93
VIT_18s0001g10580.t01	Wine grape	golgi	40.05	50.17
KRH15352	Soybean	golgi	39.92	49.66
KRH05688	Soybean	golgi	39.38	49.16
Solyc04g078990.2.1	Tomato	golgi	38.3	49.13
PGSC0003DMT400020680	Potato	golgi	38.02	48.53
KRH61283	Soybean	golgi	38.02	47.23
Solyc04g078980.2.1	Tomato	golgi	34.91	45.74
PGSC0003DMT400020678	Potato	golgi	34.51	45.21
TraesCS4B01G301200.1	Wheat	golgi	31.53	39.29
Zm00001d027938_P001	Maize	plasma membrane	31.26	38.95
TraesCS4D01G299500.1	Wheat	golgi	31.12	38.66
TraesCS4A01G004100.1	Wheat	golgi	30.85	38.51
EER95378	Sorghum	golgi, plastid	31.26	38.18
GSMUA_Achr6P10110_001	Banana	endoplasmic reticulum	26.93	37.9
Os03t0184300-02	Rice	golgi	31.39	37.78
GSMUA_Achr3P01740_001	Banana	endoplasmic reticulum, golgi	27.6	37.36
GSMUA_Achr2P22380_001	Banana	extracellular, golgi, plastid	29.91	37.33
CDY41730	Canola	endoplasmic reticulum, golgi	26.79	35.55
CDX95254	Canola	golgi	26.66	35.37
CDX99330	Canola	cytosol	6.77	34.72
CDY31118	Canola	golgi	26.39	34.33
CDY32144	Canola	endoplasmic reticulum, golgi	25.98	34.29
CDY32143	Canola	golgi	26.25	34.15
CDY22652	Canola	golgi	25.85	33.69
CDY06343	Canola	golgi	24.9	33.52
CDY13574	Canola	plastid	19.89	31.75
CDY38807	Canola	endoplasmic reticulum, golgi, peroxisome	25.44	30.47
CDX96589	Canola	golgi, peroxisome, plasma membrane	25.3	30.26
CDY53768	Canola	plastid	26.66	29.85
CDY18535	Canola	plastid	26.66	29.85
CDX92257	Canola	plastid	25.17	29.57
CDY04633	Canola	golgi, mitochondrion, peroxisome	25.3	29.26
CDY38364	Canola	extracellular, golgi	20.3	27.03
CDY50243	Canola	cytosol, peroxisome, plastid, vacuole	25.44	18.16
CDY58112	Canola	plasma membrane	10.96	15.28
CDY02625	Canola	plasma membrane	10.96	15.2
CDX88935	Canola	plasma membrane	10.42	14.42
CDX70822	Canola	plasma membrane	10.15	14.1
CDY29996	Canola	extracellular, plasma membrane	10.28	13.92
CDY21129	Canola	extracellular, golgi, plasma membrane	10.01	13.55
CDY40445	Canola	plasma membrane	8.66	12.96
CDY32093	Canola	cytosol	7.44	12.79
CDX84174	Canola	plasma membrane	8.39	12.55
CDY32275	Canola	cytosol, mitochondrion, peroxisome, plasma membrane	6.9	11.94
CDY28291	Canola	nucleus	3.11	9.96
CDY40528	Canola	plasma membrane	5.95	7.93

Protein Annotations

KEGG:00051+2.4.1.-	KEGG:00512+2.4.1.-	KEGG:00513+2.4.1.-	KEGG:00514+2.4.1.-	KEGG:00522+2.4.1.-	KEGG:00533+2.4.1.-
KEGG:00540+2.4.1.-	KEGG:00550+2.4.1.-	KEGG:00561+2.4.1.-	KEGG:00563+2.4.1.-	KEGG:00600+2.4.1.-	KEGG:00601+2.4.1.-
KEGG:00603+2.4.1.-	KEGG:00604+2.4.1.-	KEGG:00906+2.4.1.-	KEGG:00908+2.4.1.-	KEGG:00941+2.4.1.-	KEGG:00942+2.4.1.-
KEGG:00944+2.4.1.-	KEGG:00945+2.4.1.-	KEGG:00965+2.4.1.-	MapMan:21.2.2.1.2.1	Gene3D:3.90.550.10	GO:A0A078GT12
UniProt:A0A078GT12	EnsemblPlants:CDY28292	ProteinID:CDY28292	ProteinID:CDY28292.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009834	GO:GO:0009987	GO:GO:0015020
GO:GO:0016740	GO:GO:0016757	GO:GO:0045492	EnsemblPlantsGene:GSBRNA2T00040037001	InterPro:GUX	InterPro:Glyco_trans_8
InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	PFAM:PF01501	PANTHER:PTHR11183	PANTHER:PTHR11183:SF44	SUPFAM:SSF53448
TMHMM:TMhelix	UniParc:UPI0004EEB481	SEG:seg	:	:	:

Description

BnaC03g66670DBnaC03g66670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GT12]

Coordinates

chrLK032217:-:165658..168878

Molecular Weight (calculated)

83383.2 Da

IEP (calculated)

9.475

GRAVY (calculated)

-0.088

Length

739 amino acids

Sequence
(BLAST)

001: MKEKCFLLRN GRTMMMVMKI APSKSALIRF NLILFSLSFL LYTAFSLHPS SSVYFRSAAS FVGCSFRHCT PKVTRGVKMQ ELIVENQINK IGSQIASNQT
101: KLEAPSFMEE ILTRGLGKTK IGMVNMEEAD LTQWKRYGET NHIHFDRVSK LFTWHDLFPE WIDEEEDHEV PTCPEIPMPD LERLEKFDLI VVKLPCKYPE
201: EGWRREVLRL QVNLVAANLV AKKGKTDWTW KSKVLFWSKC QPMIEIFRCD DLEKREGNWW LYRPEVVRLQ QKVSLPIGSC NLALPLWAPQ GIDKVYDLTK
301: IKAETRRPKR EAYATVLHSS ESYVCGAITL AQSLLKTNTK RDLILLHDDS ISITKLRALA AAGWKLRRIL RIRNPLAEKD SYNEYNYSKF RLWQLTDYDK
401: VVFIDADIIV LLNLDLLFHF PQMSATGNDV WIFNSGVMVI EPSNCTFSTI MSQRNDIVSY NGGDQGENIT TPPPLLHLDA GEAHGHRRRA LNSVCVITYS
501: LFFFVVFNIC TRTVIVSHAA APLDPLVITF SPPIRDTTAS HVPLLATTHP LRASSPSLVM PSFSAFIVLA ALPFMLVSAG SSDGSNGLVS STAMKTTGGP
601: GVSSSEGHCC SSVLRNLHND GSSVWNIRSE SWISRLKDPR WVQLHPSTSI SLSLPFISAN KKSTAVLFSH RQGGAVTTTP LSSLLMCFLT LIFKPLTPSS
701: KQVTLRREVA PPPRRFVPPT PRRELHSTFL GLDFKQQGF

Best Arabidopsis Sequence Match ( AT4G33330.3 )
(BLAST)

001: MKDKCLSFRN EMTIMTMIMK MAPSKSALIR FNLVLLGFSF LLYTAIFFHP SSSVYFSSGA SFVGCSFRDC TPKVVRGVKM QELVEENEIN KKDLLTASNQ
101: TKLEAPSFME EILTRGLGKT KIGMVNMEEC DLTNWKRYGE TVHIHFERVS KLFKWQDLFP EWIDEEEETE VPTCPEIPMP DFESLEKLDL VVVKLPCNYP
201: EEGWRREVLR LQVNLVAANL AAKKGKTDWR WKSKVLFWSK CQPMIEIFRC DDLEKREADW WLYRPEVVRL QQRLSLPVGS CNLALPLWAP QGVDKVYDLT
301: KIEAETKRPK REAYVTVLHS SESYVCGAIT LAQSLLQTNT KRDLILLHDD SISITKLRAL AAAGWKLRRI IRIRNPLAEK DSYNEYNYSK FRLWQLTDYD
401: KVIFIDADII VLRNLDLLFH FPQMSATGND VWIYNSGIMV IEPSNCTFTT IMSQRSEIVS YNGGDQG

Arabidopsis Description

PGSIP3plant glycogenin-like starch initiation protein 3 [Source:TAIR;Acc:AT4G33330]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.