CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31118	Canola	golgi	86.96	85.74
CDY32143	Canola	golgi	86.43	85.21
CDY22652	Canola	golgi	80.36	79.37
AT1G08990.1	Thale cress	golgi	78.39	77.56
CDY06343	Canola	golgi	75.89	77.41
CDY41730	Canola	endoplasmic reticulum, golgi	67.86	68.22
CDX95254	Canola	golgi	67.14	67.5
VIT_14s0128g00420.t01	Wine grape	golgi	49.29	50.55
PGSC0003DMT400048888	Potato	nucleus	43.39	48.21
KRG96838	Soybean	golgi	46.96	47.56
Solyc01g098970.1.1	Tomato	golgi	44.46	45.11
KRH33949	Soybean	plastid	46.07	45.03
PGSC0003DMT400048884	Potato	golgi	44.46	44.86
KRH68559	Soybean	cytosol	28.39	44.79
Solyc01g098960.1.1	Tomato	golgi	44.11	44.5
CDY45037	Canola	endoplasmic reticulum, golgi, plasma membrane	43.39	41.05
CDX75345	Canola	golgi, plastid	43.93	40.8
CDX68968	Canola	golgi	43.93	40.59
CDY38364	Canola	extracellular, golgi	34.82	35.14
CDY04633	Canola	golgi, mitochondrion, peroxisome	39.46	34.59
CDX96589	Canola	golgi, peroxisome, plasma membrane	37.68	34.14
CDY38807	Canola	endoplasmic reticulum, golgi, peroxisome	37.32	33.87
CDY18535	Canola	plastid	39.82	33.79
CDY13574	Canola	plastid	27.86	33.69
CDY53768	Canola	plastid	39.46	33.48
CDX99330	Canola	cytosol	8.39	32.64
CDX92257	Canola	plastid	36.43	32.43
CDY28291	Canola	nucleus	11.43	27.71
CDY28292	Canola	golgi	34.29	25.98
CDY50243	Canola	cytosol, peroxisome, plastid, vacuole	39.46	21.35
CDY58112	Canola	plasma membrane	16.43	17.36
CDY02625	Canola	plasma membrane	16.07	16.89
CDX88935	Canola	plasma membrane	15.89	16.67
CDX70822	Canola	plasma membrane	15.71	16.54
CDY29996	Canola	extracellular, plasma membrane	15.89	16.3
CDY21129	Canola	extracellular, golgi, plasma membrane	15.54	15.93
CDY32275	Canola	cytosol, mitochondrion, peroxisome, plasma membrane	10.89	14.29
CDX84174	Canola	plasma membrane	12.14	13.77
CDY32093	Canola	cytosol	10.54	13.72
CDY40445	Canola	plasma membrane	11.96	13.56
CDY40528	Canola	plasma membrane	10.18	10.27

Protein Annotations

EnsemblPlants:CDY32144	EnsemblPlantsGene:GSBRNA2T00051516001	Gene3D:3.90.550.10	GO:A0A078H412	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	PANTHER:PTHR11183	PANTHER:PTHR11183:SF51	ProteinID:CDY32144
ProteinID:CDY32144.1	SUPFAM:SSF53448	TMHMM:TMhelix	UniParc:UPI0004EE5E18	UniProt:A0A078H412	MapMan:21.2.2.1.2.1

Description

BnaCnng06530DBnaCnng06530D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H412]

Coordinates

chrLK032288:+:92351..95079

Molecular Weight (calculated)

65080.4 Da

IEP (calculated)

8.444

GRAVY (calculated)

-0.314

Length

560 amino acids

Sequence
(BLAST)

001: MGLKDKSLAR RFFMFYLMLT SLSFLGLVLT FRHLFILNLM ISSPSIIEIH YSLPAPVNGA PRWLRLIRNY LPDQKKIRVG LLNIAENERE SYEATGTRIL
101: ENVHVLLDPL PKNLTWESLF PAWIHEDPRW STPRCPEVPL PQVEGTAADV DVVVVKMPCD GFSESKGLRD VFRLQVNLAA AKLAVESGRR NVERTVYVVF
201: IGSCEPMHEI FRCDERVRRV GEYWVYRPNL TKLKQKLLMP VGSCQIAPLS TVLDQEAWRQ QKNESHSSTT TRVAYVTLLH SSENYVCGAI ALAQSIRQSG
301: SRHDMILLHD HSITNRSCIG LSLAGWKLRL VERIRSPFSV KDSYNEWNYS KLRVWQVTDY DKLVFIDADF IITKNVDYLF SYPQLSAAGN SRVLFNSGVM
401: VLEPSACLFE ELMQQSLKIE SYNGGDQGFL NEYFVWWHRL SKRVNTMKYF GEGTKIGPKR NLPDHLEGIH YFGIKPWLCY RDYDCNWDLT TRRVFASESV
501: NEKWWKVYDE MPEKLQHYCG LTSKMDTNLE NWRQTAKLEG FPEEHWRIEV KDPRKKNLVD

Best Arabidopsis Sequence Match ( AT1G08990.1 )
(BLAST)

001: MGAKSKSSST RFFMFYLILI SLSFLGLLLN FKPLFLLNPM IASPSIVEIR YSLPEPVKRT PIWLRLIRNY LPDEKKIRVG LLNIAENERE SYEASGTSIL
101: ENVHVSLDPL PNNLTWTSLF PVWIDEDHTW HIPSCPEVPL PKMEGSEADV DVVVVKVPCD GFSEKRGLRD VFRLQVNLAA ANLVVESGRR NVDRTVYVVF
201: IGSCGPMHEI FRCDERVKRV GDYWVYRPDL TRLKQKLLMP PGSCQIAPLG QGEAWIQDKN RNLTSEKTTL SSFTAQRVAY VTLLHSSEVY VCGAIALAQS
301: IRQSGSTKDM ILLHDDSITN ISLIGLSLAG WKLRRVERIR SPFSKKRSYN EWNYSKLRVW QVTDYDKLVF IDADFIIVKN IDYLFSYPQL SAAGNNKVLF
401: NSGVMVLEPS ACLFEDLMLK SFKIGSYNGG DQGFLNEYFV WWHRLSKRLN TMKYFGDESR HDKARNLPEN LEGIHYLGLK PWRCYRDYDC NWDLKTRRVY
501: ASESVHARWW KVYDKMPKKL KGYCGLNLKM EKNVEKWRKM AKLNGFPENH WKIRIKDPRK KNRLSQ

Arabidopsis Description

GUX5Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5 [Source:UniProtKB/Swiss-Prot;Acc:F4HZC3]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.