CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 1
golgi 4
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75345	Canola	golgi, plastid	96.53	97.01
CDY45037	Canola	endoplasmic reticulum, golgi, plasma membrane	88.61	90.71
AT4G33330.2	Thale cress	endoplasmic reticulum, golgi, plastid	85.15	82.43
KRH15352	Soybean	golgi	63.2	64.48
KRH05688	Soybean	golgi	62.38	63.85
Solyc04g078990.2.1	Tomato	golgi	59.24	62.33
VIT_18s0001g10580.t01	Wine grape	golgi	60.4	62.03
PGSC0003DMT400020680	Potato	golgi	58.75	61.49
KRH61283	Soybean	golgi	59.41	60.5
CDY28292	Canola	golgi	72.77	59.68
Solyc04g078980.2.1	Tomato	golgi	55.45	59.57
PGSC0003DMT400020678	Potato	golgi	55.12	59.22
CDY28291	Canola	nucleus	21.29	55.84
TraesCS4B01G301200.1	Wheat	golgi	50.0	51.1
Zm00001d027938_P001	Maize	plasma membrane	49.84	50.93
TraesCS4D01G299500.1	Wheat	golgi	49.51	50.42
TraesCS4A01G004100.1	Wheat	golgi	49.17	50.34
EER95378	Sorghum	golgi, plastid	49.34	49.42
Os03t0184300-02	Rice	golgi	49.67	49.02
GSMUA_Achr6P10110_001	Banana	endoplasmic reticulum	40.92	47.24
GSMUA_Achr3P01740_001	Banana	endoplasmic reticulum, golgi	41.75	46.34
GSMUA_Achr2P22380_001	Banana	extracellular, golgi, plastid	44.22	45.27
CDY41730	Canola	endoplasmic reticulum, golgi	41.09	44.7
CDX95254	Canola	golgi	40.92	44.52
CDY32144	Canola	endoplasmic reticulum, golgi	40.59	43.93
CDY06343	Canola	golgi	39.6	43.72
CDY31118	Canola	golgi	40.76	43.49
CDY32143	Canola	golgi	40.76	43.49
CDY22652	Canola	golgi	40.59	43.39
CDY18535	Canola	plastid	42.57	39.09
CDY53768	Canola	plastid	42.57	39.09
CDY04633	Canola	golgi, mitochondrion, peroxisome	40.92	38.81
CDY38364	Canola	extracellular, golgi	34.32	37.48
CDY38807	Canola	endoplasmic reticulum, golgi, peroxisome	37.95	37.28
CDX96589	Canola	golgi, peroxisome, plasma membrane	37.95	37.22
CDX92257	Canola	plastid	38.45	37.04
CDY13574	Canola	plastid	26.57	34.77
CDX99330	Canola	cytosol	8.09	34.03
CDY50243	Canola	cytosol, peroxisome, plastid, vacuole	40.92	23.96
CDY58112	Canola	plasma membrane	15.18	17.36
CDY02625	Canola	plasma membrane	14.85	16.89
CDX88935	Canola	plasma membrane	14.52	16.48
CDX70822	Canola	plasma membrane	14.03	15.98
CDY29996	Canola	extracellular, plasma membrane	14.03	15.57
CDY21129	Canola	extracellular, golgi, plasma membrane	13.7	15.2
CDY40445	Canola	plasma membrane	12.05	14.78
CDX84174	Canola	plasma membrane	11.72	14.37
CDY32093	Canola	cytosol	10.07	14.19
CDY32275	Canola	cytosol, mitochondrion, peroxisome, plasma membrane	9.74	13.82
CDY40528	Canola	plasma membrane	8.91	9.73

Protein Annotations

KEGG:00051+2.4.1.-	KEGG:00512+2.4.1.-	KEGG:00513+2.4.1.-	KEGG:00514+2.4.1.-	KEGG:00522+2.4.1.-	KEGG:00533+2.4.1.-
KEGG:00540+2.4.1.-	KEGG:00550+2.4.1.-	KEGG:00561+2.4.1.-	KEGG:00563+2.4.1.-	KEGG:00600+2.4.1.-	KEGG:00601+2.4.1.-
KEGG:00603+2.4.1.-	KEGG:00604+2.4.1.-	KEGG:00906+2.4.1.-	KEGG:00908+2.4.1.-	KEGG:00941+2.4.1.-	KEGG:00942+2.4.1.-
KEGG:00944+2.4.1.-	KEGG:00945+2.4.1.-	KEGG:00965+2.4.1.-	MapMan:21.2.2.1.2.1	Gene3D:3.90.550.10	GO:A0A078C1K5
EnsemblPlants:CDX68968	ProteinID:CDX68968	ProteinID:CDX68968.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009834	GO:GO:0009987	GO:GO:0015020	GO:GO:0016740
GO:GO:0016757	GO:GO:0045492	EnsemblPlantsGene:GSBRNA2T00130716001	InterPro:GUX	InterPro:Glyco_trans_8	InterPro:IPR029044
InterPro:Nucleotide-diphossugar_trans	PFAM:PF01501	PANTHER:PTHR11183	PANTHER:PTHR11183:SF44	SUPFAM:SSF53448	TMHMM:TMhelix
UniParc:UPI0004EEEBAD	SEG:seg	:	:	:	:

Description

BnaC01g04850D

Coordinates

chrLK031789:-:2238846..2242746

Molecular Weight (calculated)

71417.4 Da

IEP (calculated)

8.849

GRAVY (calculated)

-0.323

Length

606 amino acids

Sequence
(BLAST)

001: MKEKCFSFRN GRTMMMMMMI MKIVPSKSTL IRFNLILFAL SFLLSTAFFL HPASSVYFSS AASFVGCSFR DCIPKVERGV KMQELIVENQ INKIDSSNQT
101: KLEAPSFMEG LITRGLGKTK IGMVNMEESD LTQWKRYGEI IHIHFERVSK FFSWHDLFPE WIDEEEDTEV PTCPEIPMPD FESLEKLDLV IVKLPCKYPE
201: EGWRREVLRL QVNLVAANLV VKKVKTDWTW KSKVLFWSKC QPMIEIFRCD DMEKREGDWW LYRPEVVRLQ QKLNLPIGSC NLALPLWAPQ GIDKVYDLTK
301: IQAETRRPKR EAYATVLHSS ESYVCGAITL AQSLLQTNTK RDLILLHDDS ISIAKLRALA AAGWKLRRIL RIRNPLAEKD SYNEYNYSKF RLWQLTDYDK
401: VVFIDADIII LRNLDILFHF PQMSATGNDV WIFNSGVMVI EPSNCTFSMI MSQRSDIVSY NGGDQGYLNE IFVWWHRLPR RVNFLKNFWS NTTNERNIKN
501: HLFAAEPPQL YAVHYLGWKP WLCYRDYDCN FDVDEQLVYA SDAAHGRWWK VHDAMDESLQ KFCRLTKQRR TEINWERRRA RLRGSTDFHW RINVTDPRRR
601: RSYLIG

Best Arabidopsis Sequence Match ( AT4G33330.4 )
(BLAST)

001: MKDKCLSFRN EMTIMTMIMK MAPSKSALIR FNLVLLGFSF LLYTAIFFHP SSSVYFSSGA SFVGCSFRDC TPKVVRGVKM QELVEENEIN KKDLLTASNQ
101: TKLEAPSFME EILTRGLGKT KIGMVNMEEC DLTNWKRYGE TVHIHFERVS KLFKWQDLFP EWIDEEEETE VPTCPEIPMP DFESLEKLDL VVVKLPCNYP
201: EEGWRREVLR LQVNLVAANL AAKKGKTDWR WKSKVLFWSK CQPMIEIFRC DDLEKREADW WLYRPEVVRL QQRLSLPVGS CNLALPLWAP QGVDKVYDLT
301: KIEAETKRPK REAYVTVLHS SESYVCGAIT LAQSLLQTNT KRDLILLHDD SISITKLRAL AAAGWKLRRI IRIRNPLAEK DSYNEYNYSK FRLWQLTDYD
401: KVIFIDADII VLRNLDLLFH FPQMSATGND VWIYNSGIMV IEPSNCTFTT IMSQRSEIVS YNGGDQGYLN EIFVWWHRLP RRVNFLKNFW SNTTKERNIK
501: NNLFAAEPPQ VYAVHYLGWK PWLCYRDYDC NYDVDEQLVY ASDAAHVRWW KVHDSMDDAL QKFCRLTKKR RTEINWERRK ARLRGSTDYH WKINVTDPRR
601: RRSYLIG

Arabidopsis Description

PGSIP3plant glycogenin-like starch initiation protein 3 [Source:TAIR;Acc:AT4G33330]
SUBAcon: [endoplasmic reticulum,golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.