Factsheet for TraesCS4A01G004100.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

golgi 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, golgi
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G299500.1	Wheat	golgi	97.8	97.31
TraesCS4B01G301200.1	Wheat	golgi	96.79	96.63
EER95378	Sorghum	golgi, plastid	83.28	81.49
Zm00001d027938_P001	Maize	plasma membrane	81.42	81.28
Os03t0184300-02	Rice	golgi	83.28	80.29
VIT_18s0001g10580.t01	Wine grape	golgi	54.39	54.58
KRH15352	Soybean	golgi	53.72	53.54
KRH05688	Soybean	golgi	52.87	52.87
Solyc04g078990.2.1	Tomato	golgi	50.84	52.26
PGSC0003DMT400020680	Potato	golgi	50.68	51.81
Bra011433.1-P	Field mustard	golgi	51.52	51.69
KRH61283	Soybean	golgi	51.69	51.43
PGSC0003DMT400020678	Potato	golgi	47.97	50.35
CDX75345	Canola	golgi, plastid	51.18	50.25
GSMUA_Achr3P01740_001	Banana	endoplasmic reticulum, golgi	46.28	50.18
Solyc04g078980.2.1	Tomato	golgi	47.8	50.18
GSMUA_Achr6P10110_001	Banana	endoplasmic reticulum	44.26	49.9
CDY45037	Canola	endoplasmic reticulum, golgi, plasma membrane	49.83	49.83
Bra034558.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	49.83	49.83
CDX68968	Canola	golgi	50.34	49.17
AT4G33330.2	Thale cress	endoplasmic reticulum, golgi, plastid	51.35	48.56
GSMUA_Achr2P22380_001	Banana	extracellular, golgi, plastid	45.78	45.78
TraesCS1A01G266600.2	Wheat	cytosol, golgi, peroxisome	42.57	39.94
TraesCS5A01G067100.1	Wheat	golgi	42.91	39.44
TraesCS3A01G409200.2	Wheat	golgi	41.72	38.96
TraesCS3A01G381300.1	Wheat	golgi	38.01	37.38
CDY28291	Canola	nucleus	13.34	34.2
CDX99330	Canola	cytosol	8.11	33.33
CDY28292	Canola	golgi	38.51	30.85
TraesCS2A01G381700.1	Wheat	plasma membrane	15.03	16.45
TraesCS6A01G223900.1	Wheat	plasma membrane	14.86	16.27
TraesCS1A01G211500.1	Wheat	golgi, plasma membrane	12.33	14.87
TraesCS2A01G412200.1	Wheat	plasma membrane	11.66	14.65

Protein Annotations

MapMan:21.2.2.1.2.1	Gene3D:3.90.550.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009834	GO:GO:0009987	GO:GO:0015020	GO:GO:0016740	GO:GO:0016757
GO:GO:0045492	InterPro:GUX	InterPro:Glyco_trans_8	InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	PFAM:PF01501
PANTHER:PTHR11183	PANTHER:PTHR11183:SF44	SUPFAM:SSF53448	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS4A01G004100	EnsemblPlants:TraesCS4A01G004100.1
TIGR:cd02537	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4A:-:2951668..2959118

Molecular Weight (calculated)

67589.8 Da

IEP (calculated)

8.732

GRAVY (calculated)

-0.319

Length

592 amino acids

Sequence
(BLAST)

001: MKTGAGDAVK SPVAGLRAGA IVKLNAAFLA FFFLVYMALL LHPKYSHILD RGASSLVRCT FRDACPSTSQ LSRKPGGRSA ASANKVVATE RIVNAGRAPT
101: MFNELRGRLR MGLVNIGRDE LLALGVEGDA VGVDFDRVSD VFRWSDLFPE WIDEEEEDGV PSCPEIPMPD FSRYDDVDVV VAALPCNRTA RGWNRDVFRL
201: QVHLVAAQMA ARKGRRDGAG RVRVVLRSEC EPMMDLFRCD EAAGREGDWW MYTVDAPRME EKLRLPVGSC NLALPLWGPT GIHEVFNASD LTVVDAGSQR
301: REAYATVLHS SDRYLCGAIV LAQSIRRSGS TRDMVLLHDH TVSKPALRAL VAAGWIPRRI RRIRNPRAER GSYNEYNYSK FRLWQLTEYF RVVFIDADIL
401: VLRSLDALFR FPQISAVGND GSLFNSGIMV LEPSACTFEA LVRGRRTIRS YNGGDQGYLN EVFVWWHRLP RRVNYLKNFW ANTTGERALK ERLFRAEPAE
501: VWSIHYLGLK PWRCYRDYDC NWNIDDQRVY ASDEAHRRWW QVYDQMGEVM RGPCALSERR KVEIAWDRHV AQEIGYADQH WKINITDPRK WE

Best Arabidopsis Sequence Match ( AT4G33330.2 )
(BLAST)

001: MTIMTMIMKM APSKSALIRF NLVLLGFSFL LYTAIFFHPS SSVYFSSGAS FVGCSFRDCT PKVVRGVKMQ ELVEENEINK KDLLTASNQT KLEAPSFMEE
101: ILTRGLGKTK IGMVNMEECD LTNWKRYGET VHIHFERVSK LFKWQDLFPE WIDEEEETEV PTCPEIPMPD FESLEKLDLV VVKLPCNYPE EGWRREVLRL
201: QVNLVAANLA AKKGKTDWRW KSKVLFWSKC QPMIEIFRCD DLEKREADWW LYRPEVVRLQ QRLSLPVGSC NLALPLWAPQ GVDKVYDLTK IEAETKRPKR
301: EAYVTVLHSS ESYVCGAITL AQSLLQTNTK RDLILLHDDS ISITKLRALA AAGWKLRRII RIRNPLAEKD SYNEYNYSKF RLWQLTDYDK VIFIDADIIV
401: LRNLDLLFHF PQMSATGNDV WIYNSGIMVI EPSNCTFTTI MSQRSEIVSY NGGDQGYLNE IFVWWHRLPR RVNFLKNFWS NTTKERNIKN NLFAAEPPQV
501: YAVHYLGWKP WLCYRDYDCN YDVDEQLVYA SDAAHVRWWK VHDSMDDALQ KFCRLTKKRR TEINWERRKA RLRGSTDYHW KINVTDPRRR PNINFRMVSA
601: QLEKCLAFDE KGIKVINLAE EMENTL

Arabidopsis Description

PGSIP3plant glycogenin-like starch initiation protein 3 [Source:TAIR;Acc:AT4G33330]
SUBAcon: [endoplasmic reticulum,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.