CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
mitochondrion 2
golgi 4
nucleus 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	nucleus, plastid
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15352	Soybean	golgi	74.62	74.75
KRH05688	Soybean	golgi	73.11	73.48
VIT_18s0001g10580.t01	Wine grape	golgi	65.04	65.59
Solyc04g078990.2.1	Tomato	golgi	62.18	64.24
PGSC0003DMT400020680	Potato	golgi	62.02	63.73
Bra011433.1-P	Field mustard	golgi	61.18	61.69
Solyc04g078980.2.1	Tomato	golgi	58.32	61.52
Bra034558.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	61.18	61.49
CDY45037	Canola	endoplasmic reticulum, golgi, plasma membrane	61.18	61.49
PGSC0003DMT400020678	Potato	golgi	57.82	60.99
CDX75345	Canola	golgi, plastid	61.01	60.2
CDX68968	Canola	golgi	60.5	59.41
AT4G33330.2	Thale cress	endoplasmic reticulum, golgi, plastid	61.85	58.79
Zm00001d027938_P001	Maize	plasma membrane	51.93	52.11
TraesCS4B01G301200.1	Wheat	golgi	51.76	51.94
TraesCS4D01G299500.1	Wheat	golgi	51.76	51.76
TraesCS4A01G004100.1	Wheat	golgi	51.43	51.69
EER95378	Sorghum	golgi, plastid	52.27	51.41
Os03t0184300-02	Rice	golgi	52.44	50.81
GSMUA_Achr6P10110_001	Banana	endoplasmic reticulum	44.37	50.29
GSMUA_Achr3P01740_001	Banana	endoplasmic reticulum, golgi	44.54	48.53
GSMUA_Achr2P22380_001	Banana	extracellular, golgi, plastid	46.22	46.45
KRG96838	Soybean	golgi	41.18	44.3
KRH68559	Soybean	cytosol	26.22	43.94
CDY28291	Canola	nucleus	16.64	42.86
KRH33949	Soybean	plastid	39.33	40.84
KRH15962	Soybean	golgi	40.34	40.61
KRH53878	Soybean	cytosol, golgi, mitochondrion	42.35	39.44
KRH64070	Soybean	plastid	42.18	39.28
KRH59555	Soybean	cytosol	42.18	39.22
KRH72868	Soybean	golgi	41.68	38.51
CDY28292	Canola	golgi	47.23	38.02
KRH57436	Soybean	cytosol	35.63	35.69
CDX99330	Canola	cytosol	7.73	31.94
KRH43404	Soybean	cytosol	10.59	22.5
KRG97021	Soybean	endoplasmic reticulum	14.96	16.15
KRH68773	Soybean	endoplasmic reticulum	14.79	15.97
KRG92718	Soybean	endoplasmic reticulum	14.12	15.53
KRH04125	Soybean	plasma membrane	11.09	13.87
KRH34122	Soybean	plasma membrane	11.93	13.76
KRH57402	Soybean	extracellular, golgi, plasma membrane	10.92	13.63
KRH28078	Soybean	plasma membrane	10.76	13.56
KRH77365	Soybean	cytosol, peroxisome	6.22	11.21

Protein Annotations

EntrezGene:100812365	MapMan:21.2.2.1.2.1	Gene3D:3.90.550.10	EMBL:ACUP02002160	EnsemblPlantsGene:GLYMA_04G038500	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009834	GO:GO:0009987
GO:GO:0015020	GO:GO:0016740	GO:GO:0016757	GO:GO:0045492	InterPro:GUX	InterPro:Glyco_trans_8
UniProt:I1JTI9	InterPro:IPR029044	EnsemblPlants:KRH61283	ProteinID:KRH61283	ProteinID:KRH61283.1	InterPro:Nucleotide-diphossugar_trans
PFAM:PF01501	PANTHER:PTHR11183	PANTHER:PTHR11183:SF44	SUPFAM:SSF53448	TMHMM:TMhelix	UniParc:UPI000233939D
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:3058143..3063164

Molecular Weight (calculated)

69923.2 Da

IEP (calculated)

9.418

GRAVY (calculated)

-0.486

Length

595 amino acids

Sequence
(BLAST)

001: MQGSSLKKML KTMPSKASIT RINLVFLVVF LVVYATVLPH PSSDYLQDAG SIVRCSLGEC HHRVRHENFK MKAALDEPQA NPQRQKNKSA KKIEVPSFFS
101: KLGERMKIGM VNMKENDVSN WSTHGERTSV YFERVSQFLN WTDLFPEWID EEEENDVPSC PEIPMPEYAE YGSMDVIVAK LPCRYPEEGW KRDVFRLQVH
201: LIVANLAVKK GKKDWRGKTR VVFWSKCRPM LELFPCDNLV KGEGEWWYYE PEVKRLEHKV SLPIGSCKLA LPLWEQVVDE VYELSKIEKS VESRRRIKRE
301: AYATVLHSSE AYVCGAITLA QSLLQTGTKR DLILLIDKFI SVRKREALSE AGWKIRIITR IRNPKAEKGS YNEYNYSKFR LWQLTDYDKV IFIDSDIIVL
401: RNLDILFHFP QITATGNDQS IFNSGIMVIE PSKCTFRTLM RHRDDVVSYN GGDQGFLNEV FVWWHRLPRR VNFLKNFWAN TTVEARAKNA LFAAEPAEVY
501: AIHYLGWKPW HCYRDYDCNW DTPEQRVYAS DVAHRRWWKV HDAMEEGLQR LCRLTKRRRS ELNWERRKAS KMRLPDGHWK INITDPRRFA SLFMD

Best Arabidopsis Sequence Match ( AT4G33330.2 )
(BLAST)

001: MTIMTMIMKM APSKSALIRF NLVLLGFSFL LYTAIFFHPS SSVYFSSGAS FVGCSFRDCT PKVVRGVKMQ ELVEENEINK KDLLTASNQT KLEAPSFMEE
101: ILTRGLGKTK IGMVNMEECD LTNWKRYGET VHIHFERVSK LFKWQDLFPE WIDEEEETEV PTCPEIPMPD FESLEKLDLV VVKLPCNYPE EGWRREVLRL
201: QVNLVAANLA AKKGKTDWRW KSKVLFWSKC QPMIEIFRCD DLEKREADWW LYRPEVVRLQ QRLSLPVGSC NLALPLWAPQ GVDKVYDLTK IEAETKRPKR
301: EAYVTVLHSS ESYVCGAITL AQSLLQTNTK RDLILLHDDS ISITKLRALA AAGWKLRRII RIRNPLAEKD SYNEYNYSKF RLWQLTDYDK VIFIDADIIV
401: LRNLDLLFHF PQMSATGNDV WIYNSGIMVI EPSNCTFTTI MSQRSEIVSY NGGDQGYLNE IFVWWHRLPR RVNFLKNFWS NTTKERNIKN NLFAAEPPQV
501: YAVHYLGWKP WLCYRDYDCN YDVDEQLVYA SDAAHVRWWK VHDSMDDALQ KFCRLTKKRR TEINWERRKA RLRGSTDYHW KINVTDPRRR PNINFRMVSA
601: QLEKCLAFDE KGIKVINLAE EMENTL

Arabidopsis Description

PGSIP3plant glycogenin-like starch initiation protein 3 [Source:TAIR;Acc:AT4G33330]
SUBAcon: [endoplasmic reticulum,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.