Factsheet for PGSC0003DMT400020680

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 6
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g078990.2.1	Tomato	golgi	97.41	97.92
PGSC0003DMT400020678	Potato	golgi	69.95	71.81
VIT_18s0001g10580.t01	Wine grape	golgi	69.6	68.31
KRH05688	Soybean	golgi	67.01	65.54
KRH15352	Soybean	golgi	66.49	64.81
KRH61283	Soybean	golgi	63.73	62.02
Bra011433.1-P	Field mustard	golgi	61.83	60.68
CDY45037	Canola	endoplasmic reticulum, golgi, plasma membrane	60.97	59.63
Bra034558.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	60.79	59.46
CDX75345	Canola	golgi, plastid	61.49	59.04
CDX68968	Canola	golgi	61.49	58.75
AT4G33330.2	Thale cress	endoplasmic reticulum, golgi, plastid	62.18	57.51
TraesCS4B01G301200.1	Wheat	golgi	52.33	51.1
TraesCS4D01G299500.1	Wheat	golgi	52.33	50.92
TraesCS4A01G004100.1	Wheat	golgi	51.81	50.68
Os03t0184300-02	Rice	golgi	53.37	50.33
Zm00001d027938_P001	Maize	plasma membrane	51.12	49.92
EER95378	Sorghum	golgi, plastid	51.99	49.75
GSMUA_Achr3P01740_001	Banana	endoplasmic reticulum, golgi	46.46	49.27
GSMUA_Achr6P10110_001	Banana	endoplasmic reticulum	43.7	48.19
PGSC0003DMT400048888	Potato	nucleus	41.11	47.22
GSMUA_Achr2P22380_001	Banana	extracellular, golgi, plastid	46.11	45.1
PGSC0003DMT400048884	Potato	golgi	41.28	43.06
CDY28291	Canola	nucleus	15.2	38.1
CDY28292	Canola	golgi	48.53	38.02
PGSC0003DMT400063796	Potato	golgi	42.31	37.81
CDX99330	Canola	cytosol	7.6	30.56
PGSC0003DMT400060425	Potato	plasma membrane	15.03	16.32
PGSC0003DMT400029873	Potato	plasma membrane	13.82	15.01
PGSC0003DMT400012126	Potato	plasma membrane	11.92	14.5
PGSC0003DMT400030982	Potato	plasma membrane	11.4	14.19

Protein Annotations

EntrezGene:102593702	MapMan:21.2.2.1.2.1	Gene3D:3.90.550.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009834	GO:GO:0009987	GO:GO:0015020	GO:GO:0016020
GO:GO:0016021	GO:GO:0016740	GO:GO:0016757	GO:GO:0045492	InterPro:GUX	InterPro:Glyco_trans_8
InterPro:IPR029044	UniProt:M1ADX9	InterPro:Nucleotide-diphossugar_trans	PFAM:PF01501	EnsemblPlantsGene:PGSC0003DMG400008016	PGSC:PGSC0003DMG400008016
EnsemblPlants:PGSC0003DMT400020680	PANTHER:PTHR11183	PANTHER:PTHR11183:SF44	SUPFAM:SSF53448	TMHMM:TMhelix	UniParc:UPI0002963DA1
RefSeq:XP_006354952.1	:	:	:	:	:

Description

Glycogenin [Source:PGSC_GENE;Acc:PGSC0003DMG400008016]

Coordinates

chr4:-:68284625..68288857

Molecular Weight (calculated)

67680.4 Da

IEP (calculated)

8.627

GRAVY (calculated)

-0.353

Length

579 amino acids

Sequence
(BLAST)

001: MIMKSLPSKA LIIKINLVFL ACFLIGYAAI LLKPSTYVYH EYATSLVRCS LRECHHKGEG GIKMKAVLEE KMVMNEAKTE EKLILKREKP SFLNKMGRGM
101: KIGMVNMEGE DVSEWKIYGQ ITNIKFEKVS NLFEWKDIFP EWIDEEEEMD GPMCPEIPMP NFNNYRDNMD MLVVKLPCKY PQEGWGRDVY MLQVNLVAAN
201: LAVKRGIGKK MKLIFLSKCR PMVEMFRCEE LKKKEGDWWY YESNMDKLAQ KVSLPIGSCM LALPLWGKEI NEVYDISKIE SSTKVPTREA YATVLHSSET
301: YVCGAITLAQ SLLRTGTKRD LILLLDNSIS ESKRDALIKA GWKLRFIKRI RNPRAEKNTY NEYNYSKFRL WQLTDYDKII FIDADIIVLR NIDLLFHFPQ
401: MTATGNDASI FNSGIMVIEP SNCTFKMFMK RTKEIISYNG GDQGFLNEVF VWWHRLPRRV NFLKNFWSNN SNEVSVKNQL FGADPPKVYS IHYLGLKPWV
501: CYRDYDCNWD IGDQRVYASD IAHETWWKLH DSMDESLQKL CGLTEQRKIE LEWDRKLAGK IGFKDEHWRI NVTDPRKFS

Best Arabidopsis Sequence Match ( AT4G33330.2 )
(BLAST)

001: MTIMTMIMKM APSKSALIRF NLVLLGFSFL LYTAIFFHPS SSVYFSSGAS FVGCSFRDCT PKVVRGVKMQ ELVEENEINK KDLLTASNQT KLEAPSFMEE
101: ILTRGLGKTK IGMVNMEECD LTNWKRYGET VHIHFERVSK LFKWQDLFPE WIDEEEETEV PTCPEIPMPD FESLEKLDLV VVKLPCNYPE EGWRREVLRL
201: QVNLVAANLA AKKGKTDWRW KSKVLFWSKC QPMIEIFRCD DLEKREADWW LYRPEVVRLQ QRLSLPVGSC NLALPLWAPQ GVDKVYDLTK IEAETKRPKR
301: EAYVTVLHSS ESYVCGAITL AQSLLQTNTK RDLILLHDDS ISITKLRALA AAGWKLRRII RIRNPLAEKD SYNEYNYSKF RLWQLTDYDK VIFIDADIIV
401: LRNLDLLFHF PQMSATGNDV WIYNSGIMVI EPSNCTFTTI MSQRSEIVSY NGGDQGYLNE IFVWWHRLPR RVNFLKNFWS NTTKERNIKN NLFAAEPPQV
501: YAVHYLGWKP WLCYRDYDCN YDVDEQLVYA SDAAHVRWWK VHDSMDDALQ KFCRLTKKRR TEINWERRKA RLRGSTDYHW KINVTDPRRR PNINFRMVSA
601: QLEKCLAFDE KGIKVINLAE EMENTL

Arabidopsis Description

PGSIP3plant glycogenin-like starch initiation protein 3 [Source:TAIR;Acc:AT4G33330]
SUBAcon: [endoplasmic reticulum,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.