Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011433.1-P | Field mustard | golgi | 83.07 | 88.14 |
| CDY45037 | Canola | endoplasmic reticulum, golgi, plasma membrane | 81.63 | 86.32 |
| Bra034558.1-P | Field mustard | endoplasmic reticulum, golgi, plasma membrane | 81.31 | 85.98 |
| CDX75345 | Canola | golgi, plastid | 82.75 | 85.9 |
| CDX68968 | Canola | golgi | 82.43 | 85.15 |
| KRH15352 | Soybean | golgi | 61.18 | 64.48 |
| KRH05688 | Soybean | golgi | 60.38 | 63.85 |
| Solyc04g078990.2.1 | Tomato | golgi | 57.83 | 62.85 |
| VIT_18s0001g10580.t01 | Wine grape | golgi | 58.79 | 62.37 |
| PGSC0003DMT400020680 | Potato | golgi | 57.51 | 62.18 |
| KRH61283 | Soybean | golgi | 58.79 | 61.85 |
| Solyc04g078980.2.1 | Tomato | golgi | 52.56 | 58.33 |
| PGSC0003DMT400020678 | Potato | golgi | 52.4 | 58.16 |
| CDY28292 | Canola | golgi | 66.93 | 56.7 |
| TraesCS4B01G301200.1 | Wheat | golgi | 49.36 | 52.11 |
| Zm00001d027938_P001 | Maize | plasma membrane | 48.88 | 51.6 |
| TraesCS4A01G004100.1 | Wheat | golgi | 48.56 | 51.35 |
| TraesCS4D01G299500.1 | Wheat | golgi | 48.56 | 51.09 |
| CDY28291 | Canola | nucleus | 18.53 | 50.22 |
| Os03t0184300-02 | Rice | golgi | 48.56 | 49.51 |
| EER95378 | Sorghum | golgi, plastid | 47.76 | 49.42 |
| GSMUA_Achr6P10110_001 | Banana | endoplasmic reticulum | 40.26 | 48.0 |
| GSMUA_Achr3P01740_001 | Banana | endoplasmic reticulum, golgi | 40.26 | 46.15 |
| GSMUA_Achr2P22380_001 | Banana | extracellular, golgi, plastid | 42.65 | 45.1 |
| AT1G54940.1 | Thale cress | golgi | 38.82 | 43.63 |
| AT1G08990.1 | Thale cress | golgi | 38.5 | 42.58 |
| AT3G18660.2 | Thale cress | plastid | 41.05 | 39.0 |
| AT1G77130.1 | Thale cress | golgi | 38.02 | 38.51 |
| CDX99330 | Canola | cytosol | 8.63 | 37.5 |
| AT5G18480.1 | Thale cress | golgi | 14.06 | 16.39 |
| AT4G16600.1 | Thale cress | plasma membrane | 11.02 | 13.97 |
| AT2G35710.1 | Thale cress | plasma membrane | 11.02 | 13.88 |
Protein Annotations
| MapMan:21.2.2.1.2.1 | Gene3D:3.90.550.10 | EntrezGene:829469 | ProteinID:AEE86208.1 | ArrayExpress:AT4G33330 | EnsemblPlantsGene:AT4G33330 |
| RefSeq:AT4G33330 | TAIR:AT4G33330 | RefSeq:AT4G33330-TAIR-G | EnsemblPlants:AT4G33330.2 | TAIR:AT4G33330.2 | Unigene:At.48931 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005794 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009834 |
| GO:GO:0009987 | GO:GO:0015020 | GO:GO:0016740 | GO:GO:0016757 | GO:GO:0045492 | InterPro:GUX |
| InterPro:Glyco_trans_8 | InterPro:IPR029044 | RefSeq:NP_001154284.1 | InterPro:Nucleotide-diphossugar_trans | PFAM:PF01501 | Symbol:PGSIP3 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0007611 | PO:PO:0009005 | PO:PO:0009046 | PANTHER:PTHR11183 |
| PANTHER:PTHR11183:SF44 | SUPFAM:SSF53448 | TMHMM:TMhelix | UniParc:UPI0001A7B272 | SEG:seg | : |
Description
PGSIP3plant glycogenin-like starch initiation protein 3 [Source:TAIR;Acc:AT4G33330]
Coordinates
chr4:-:16059754..16063070
Molecular Weight (calculated)
73464.6 Da
IEP (calculated)
8.294
GRAVY (calculated)
-0.360
Length
626 amino acids
Sequence
(BLAST)
(BLAST)
001: MTIMTMIMKM APSKSALIRF NLVLLGFSFL LYTAIFFHPS SSVYFSSGAS FVGCSFRDCT PKVVRGVKMQ ELVEENEINK KDLLTASNQT KLEAPSFMEE
101: ILTRGLGKTK IGMVNMEECD LTNWKRYGET VHIHFERVSK LFKWQDLFPE WIDEEEETEV PTCPEIPMPD FESLEKLDLV VVKLPCNYPE EGWRREVLRL
201: QVNLVAANLA AKKGKTDWRW KSKVLFWSKC QPMIEIFRCD DLEKREADWW LYRPEVVRLQ QRLSLPVGSC NLALPLWAPQ GVDKVYDLTK IEAETKRPKR
301: EAYVTVLHSS ESYVCGAITL AQSLLQTNTK RDLILLHDDS ISITKLRALA AAGWKLRRII RIRNPLAEKD SYNEYNYSKF RLWQLTDYDK VIFIDADIIV
401: LRNLDLLFHF PQMSATGNDV WIYNSGIMVI EPSNCTFTTI MSQRSEIVSY NGGDQGYLNE IFVWWHRLPR RVNFLKNFWS NTTKERNIKN NLFAAEPPQV
501: YAVHYLGWKP WLCYRDYDCN YDVDEQLVYA SDAAHVRWWK VHDSMDDALQ KFCRLTKKRR TEINWERRKA RLRGSTDYHW KINVTDPRRR PNINFRMVSA
601: QLEKCLAFDE KGIKVINLAE EMENTL
101: ILTRGLGKTK IGMVNMEECD LTNWKRYGET VHIHFERVSK LFKWQDLFPE WIDEEEETEV PTCPEIPMPD FESLEKLDLV VVKLPCNYPE EGWRREVLRL
201: QVNLVAANLA AKKGKTDWRW KSKVLFWSKC QPMIEIFRCD DLEKREADWW LYRPEVVRLQ QRLSLPVGSC NLALPLWAPQ GVDKVYDLTK IEAETKRPKR
301: EAYVTVLHSS ESYVCGAITL AQSLLQTNTK RDLILLHDDS ISITKLRALA AAGWKLRRII RIRNPLAEKD SYNEYNYSKF RLWQLTDYDK VIFIDADIIV
401: LRNLDLLFHF PQMSATGNDV WIYNSGIMVI EPSNCTFTTI MSQRSEIVSY NGGDQGYLNE IFVWWHRLPR RVNFLKNFWS NTTKERNIKN NLFAAEPPQV
501: YAVHYLGWKP WLCYRDYDCN YDVDEQLVYA SDAAHVRWWK VHDSMDDALQ KFCRLTKKRR TEINWERRKA RLRGSTDYHW KINVTDPRRR PNINFRMVSA
601: QLEKCLAFDE KGIKVINLAE EMENTL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.