CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid

Predictor Summary:

plastid 4
mitochondrion 1
golgi 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027938_P001	Maize	plasma membrane	90.08	91.91
TraesCS4A01G004100.1	Wheat	golgi	81.49	83.28
TraesCS4B01G301200.1	Wheat	golgi	80.99	82.63
Os03t0184300-02	Rice	golgi	83.64	82.41
TraesCS4D01G299500.1	Wheat	golgi	80.99	82.35
VIT_18s0001g10580.t01	Wine grape	golgi	52.73	54.07
KRH15352	Soybean	golgi	51.74	52.69
Solyc04g078990.2.1	Tomato	golgi	49.92	52.43
KRH05688	Soybean	golgi	51.24	52.36
KRH61283	Soybean	golgi	51.41	52.27
PGSC0003DMT400020680	Potato	golgi	49.75	51.99
Bra011433.1-P	Field mustard	golgi	50.41	51.69
GSMUA_Achr3P01740_001	Banana	endoplasmic reticulum, golgi	46.28	51.28
PGSC0003DMT400020678	Potato	golgi	46.94	50.35
GSMUA_Achr6P10110_001	Banana	endoplasmic reticulum	43.64	50.29
CDX75345	Canola	golgi, plastid	50.08	50.25
Solyc04g078980.2.1	Tomato	golgi	46.78	50.18
Bra034558.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	49.09	50.17
CDY45037	Canola	endoplasmic reticulum, golgi, plasma membrane	49.09	50.17
CDX68968	Canola	golgi	49.42	49.34
AT4G33330.2	Thale cress	endoplasmic reticulum, golgi, plastid	49.42	47.76
GSMUA_Achr2P22380_001	Banana	extracellular, golgi, plastid	45.29	46.28
EES01856	Sorghum	golgi	42.81	40.92
EES03905	Sorghum	golgi	41.49	39.9
EES19558	Sorghum	golgi	41.16	39.46
KXG30414	Sorghum	mitochondrion	40.83	37.71
CDY28291	Canola	nucleus	12.89	33.77
CDX99330	Canola	cytosol	7.93	33.33
CDY28292	Canola	golgi	38.18	31.26
EES11117	Sorghum	plasma membrane	15.54	17.54
OQU92160	Sorghum	golgi, mitochondrion	12.56	15.64
OQU82100	Sorghum	plasma membrane	9.75	13.79

Protein Annotations

MapMan:21.2.2.1.2.1	Gene3D:3.90.550.10	EntrezGene:8057657	UniProt:C5WVP9	EnsemblPlants:EER95378	ProteinID:EER95378
ProteinID:EER95378.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009834	GO:GO:0009987	GO:GO:0015020	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740
GO:GO:0016757	GO:GO:0045492	InterPro:GUX	InterPro:Glyco_trans_8	InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans
PFAM:PF01501	PANTHER:PTHR11183	PANTHER:PTHR11183:SF44	EnsemblPlantsGene:SORBI_3001G479800	SUPFAM:SSF53448	unigene:Sbi.17949
TMHMM:TMhelix	UniParc:UPI0001A82E7E	RefSeq:XP_002468380.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:75151132..75156143

Molecular Weight (calculated)

68380.3 Da

IEP (calculated)

8.351

GRAVY (calculated)

-0.307

Length

605 amino acids

Sequence
(BLAST)

001: MGVTTAGEAA CKSPAVRASV IVRLNAAFLA FFLFAYLALL LHPKYSDILD RGATSLVRCT FRDSCPPPAP SSSSSTQLSR KLGGVAANKV AAAAERIVIV
101: NAGRAPAMFD DLRGRLRMGL VNIGRDEVVA LGVEGDAVRV DFDRVSETFR WSDLFPEWID EEEDDEGPSC PELPMPDWSR YGDVDVVVAS LPCNRSATGW
201: NRDVFRLQVH LVAAQVAARK GRRNGAGAGA VRVVLRSQCE PMMDLFRCDE AVGREGDWYM YRVDVQRLEE KLRLPVGSCN LAMPLWGAGG IQEVFNASSE
301: LATSPSWSGG RPRREAYATV LHSSDTYLCG AIVLAQSIRR SGSTRDLILL HDHTVSKPAL RALTAAGWTP RRIKRIRNPR AARGTYNEYN YSKFRLWQLT
401: DYDRVVFVDA DILVLRSLDA LFAFPQLTAV GNDGSLFNSG VMVIEPSACT FDALIRDRRT IRSYNGGDQG FLNEVFVWWH RLPRRVNYLK NFWANTTGER
501: ALKERMFRAD PAEVWSIHYL GMKPWTCYRD YDCNWNVADQ RVYASDEAHR RWWQVYDQMG ETMRGPCRLS ERRKVEIAWD RHVAEEVGYA DQHWKINITD
601: PRKWD

Best Arabidopsis Sequence Match ( AT4G33330.2 )
(BLAST)

001: MTIMTMIMKM APSKSALIRF NLVLLGFSFL LYTAIFFHPS SSVYFSSGAS FVGCSFRDCT PKVVRGVKMQ ELVEENEINK KDLLTASNQT KLEAPSFMEE
101: ILTRGLGKTK IGMVNMEECD LTNWKRYGET VHIHFERVSK LFKWQDLFPE WIDEEEETEV PTCPEIPMPD FESLEKLDLV VVKLPCNYPE EGWRREVLRL
201: QVNLVAANLA AKKGKTDWRW KSKVLFWSKC QPMIEIFRCD DLEKREADWW LYRPEVVRLQ QRLSLPVGSC NLALPLWAPQ GVDKVYDLTK IEAETKRPKR
301: EAYVTVLHSS ESYVCGAITL AQSLLQTNTK RDLILLHDDS ISITKLRALA AAGWKLRRII RIRNPLAEKD SYNEYNYSKF RLWQLTDYDK VIFIDADIIV
401: LRNLDLLFHF PQMSATGNDV WIYNSGIMVI EPSNCTFTTI MSQRSEIVSY NGGDQGYLNE IFVWWHRLPR RVNFLKNFWS NTTKERNIKN NLFAAEPPQV
501: YAVHYLGWKP WLCYRDYDCN YDVDEQLVYA SDAAHVRWWK VHDSMDDALQ KFCRLTKKRR TEINWERRKA RLRGSTDYHW KINVTDPRRR PNINFRMVSA
601: QLEKCLAFDE KGIKVINLAE EMENTL

Arabidopsis Description

PGSIP3plant glycogenin-like starch initiation protein 3 [Source:TAIR;Acc:AT4G33330]
SUBAcon: [endoplasmic reticulum,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.