Factsheet for Zm00001d027938_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

mitochondrion 2
golgi 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
iPSORT:	mitochondrion
MultiLoc:	golgi
Predotar:	plastid
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	golgi

plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95378	Sorghum	golgi, plastid	91.91	90.08
TraesCS4A01G004100.1	Wheat	golgi	81.28	81.42
Os03t0184300-02	Rice	golgi	84.15	81.27
TraesCS4B01G301200.1	Wheat	golgi	80.78	80.78
TraesCS4D01G299500.1	Wheat	golgi	80.94	80.67
VIT_18s0001g10580.t01	Wine grape	golgi	53.29	53.56
KRH15352	Soybean	golgi	52.78	52.69
Bra011433.1-P	Field mustard	golgi	52.11	52.37
GSMUA_Achr3P01740_001	Banana	endoplasmic reticulum, golgi	48.06	52.2
KRH05688	Soybean	golgi	51.94	52.03
KRH61283	Soybean	golgi	52.11	51.93
Solyc04g078990.2.1	Tomato	golgi	50.08	51.56
PGSC0003DMT400020680	Potato	golgi	49.92	51.12
CDX75345	Canola	golgi, plastid	51.77	50.91
CDY45037	Canola	endoplasmic reticulum, golgi, plasma membrane	50.76	50.84
Bra034558.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	50.76	50.84
GSMUA_Achr6P10110_001	Banana	endoplasmic reticulum	44.52	50.29
PGSC0003DMT400020678	Potato	golgi	47.72	50.18
Solyc04g078980.2.1	Tomato	golgi	47.55	50.0
CDX68968	Canola	golgi	50.93	49.84
AT4G33330.2	Thale cress	endoplasmic reticulum, golgi, plastid	51.6	48.88
GSMUA_Achr2P22380_001	Banana	extracellular, golgi, plastid	47.22	47.3
Zm00001d042627_P005	Maize	golgi	44.01	40.91
Zm00001d038229_P001	Maize	plasma membrane	42.83	40.19
Zm00001d012224_P001	Maize	golgi	43.34	40.09
Zm00001d042817_P001	Maize	golgi	42.16	39.43
Zm00001d016806_P001	Maize	golgi	41.15	38.24
CDY28291	Canola	nucleus	13.66	35.06
CDX99330	Canola	cytosol	8.26	34.03
CDY28292	Canola	golgi	38.95	31.26
Zm00001d025865_P001	Maize	plasma membrane	14.67	16.23
Zm00001d002725_P001	Maize	plasma membrane	12.48	15.78
Zm00001d047104_P001	Maize	golgi, mitochondrion	12.82	15.57
Zm00001d029920_P001	Maize	mitochondrion	12.98	15.16
Zm00001d026165_P003	Maize	plasma membrane	10.46	12.97

Protein Annotations

EntrezGene:100191941	MapMan:21.2.2.1.2.1	Gene3D:3.90.550.10	UniProt:B4FAR2	EMBL:BT034200	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009834	GO:GO:0009987
GO:GO:0015020	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016757	GO:GO:0045492
InterPro:GUX	InterPro:Glyco_trans_8	InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	ProteinID:ONL94338.1	PFAM:PF01501
PANTHER:PTHR11183	PANTHER:PTHR11183:SF44	SUPFAM:SSF53448	TMHMM:TMhelix	UniParc:UPI00017B61E5	EnsemblPlantsGene:Zm00001d027938
EnsemblPlants:Zm00001d027938_P001	EnsemblPlants:Zm00001d027938_T001	SEG:seg	:	:	:

Description

UDP-glucuronate:xylan alpha-glucuronosyltransferase 2

Coordinates

chr1:+:17999743..18003647

Molecular Weight (calculated)

67335.1 Da

IEP (calculated)

8.240

GRAVY (calculated)

-0.362

Length

593 amino acids

Sequence
(BLAST)

001: MGVTTAGEAV CKSPARASVI VRLNAAFLAF FLFAYVALLL HPKYSGLLDR GATSLVRCTF RDSCPPPSPS NQQLSRKLGG VAANKVAEEE RIVNAGRAAA
101: MFDELRGRLR MGLVNIGRDE LLALGVEGDA VRVDFERVSD AFRWSDLFPE WIDEEEDDEG PSCPELPMPD WARYGGDVDV VVASLPCNRS APGWNRDVFR
201: LQVHLVAAQV AARKGRRDGA GAVRVVLRSQ CEPMMDLFRC DEEVGREGDW YMYKVDVPRL EEKLRLPVGS CNLAMPLWGS GGRGIHEVLN ATSWSGGRRP
301: RREAYATVLH SSDTYLCGAI VLAQSIRRAG STRDLVLLHD HTVSRPALRA LSAAGWTPRR IKRIRNPRAA RGTYNEYNYS KFRLWQLADY DRVVFVDADI
401: LVLRDLDALF AFPQLAAVGN DGSLFNSGVM VIEPSACTFD ALMRGRRTVR SYNGGDQGFL NEVFVWWHRL PRRVNYLKNF WANTTGERAL KERLFRADPP
501: EVWSVHYLGM KPWTCYRDYD CNWNVADQRV YASDEAHARW WQVYDQMGDH MRGPCRLSER RKVEIAWDRH VAEELGYTDQ HWKINITDPR KWD

Best Arabidopsis Sequence Match ( AT4G33330.2 )
(BLAST)

001: MTIMTMIMKM APSKSALIRF NLVLLGFSFL LYTAIFFHPS SSVYFSSGAS FVGCSFRDCT PKVVRGVKMQ ELVEENEINK KDLLTASNQT KLEAPSFMEE
101: ILTRGLGKTK IGMVNMEECD LTNWKRYGET VHIHFERVSK LFKWQDLFPE WIDEEEETEV PTCPEIPMPD FESLEKLDLV VVKLPCNYPE EGWRREVLRL
201: QVNLVAANLA AKKGKTDWRW KSKVLFWSKC QPMIEIFRCD DLEKREADWW LYRPEVVRLQ QRLSLPVGSC NLALPLWAPQ GVDKVYDLTK IEAETKRPKR
301: EAYVTVLHSS ESYVCGAITL AQSLLQTNTK RDLILLHDDS ISITKLRALA AAGWKLRRII RIRNPLAEKD SYNEYNYSKF RLWQLTDYDK VIFIDADIIV
401: LRNLDLLFHF PQMSATGNDV WIYNSGIMVI EPSNCTFTTI MSQRSEIVSY NGGDQGYLNE IFVWWHRLPR RVNFLKNFWS NTTKERNIKN NLFAAEPPQV
501: YAVHYLGWKP WLCYRDYDCN YDVDEQLVYA SDAAHVRWWK VHDSMDDALQ KFCRLTKKRR TEINWERRKA RLRGSTDYHW KINVTDPRRR PNINFRMVSA
601: QLEKCLAFDE KGIKVINLAE EMENTL

Arabidopsis Description

PGSIP3plant glycogenin-like starch initiation protein 3 [Source:TAIR;Acc:AT4G33330]
SUBAcon: [endoplasmic reticulum,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.