CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 8
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97021	Soybean	endoplasmic reticulum	96.19	96.19
KRG92718	Soybean	endoplasmic reticulum	78.22	79.67
VIT_14s0036g00430.t01	Wine grape	golgi	74.41	75.09
KRH34122	Soybean	plasma membrane	70.05	74.81
Solyc04g009920.2.1	Tomato	golgi	68.97	71.29
PGSC0003DMT400029873	Potato	plasma membrane	68.6	70.92
Solyc05g055040.2.1	Tomato	plasma membrane	67.33	69.61
PGSC0003DMT400060425	Potato	plasma membrane	67.15	69.42
CDX70822	Canola	plasma membrane	64.97	67.29
Bra006462.1-P	Field mustard	plasma membrane	65.15	67.1
CDX88935	Canola	plasma membrane	64.97	67.04
GSMUA_Achr5P18580_001	Banana	plasma membrane	66.42	66.91
CDY58112	Canola	plasma membrane	64.25	66.79
Bra040140.1-P	Field mustard	extracellular, golgi, plasma membrane	65.7	66.3
CDY21129	Canola	extracellular, golgi, plasma membrane	65.7	66.3
AT5G18480.1	Thale cress	golgi	64.61	66.29
CDY29996	Canola	extracellular, plasma membrane	65.34	65.93
Bra023678.1-P	Field mustard	plasma membrane	63.52	65.67
GSMUA_Achr11P...	Banana	plasma membrane	63.88	65.55
CDY02625	Canola	plasma membrane	63.16	65.29
EES11117	Sorghum	plasma membrane	58.8	60.45
HORVU2Hr1G089320.8	Barley	cytosol	52.27	59.88
TraesCS2D01G378200.1	Wheat	plasma membrane	58.44	59.63
TraesCS2B01G399000.1	Wheat	plasma membrane	58.44	59.63
TraesCS2A01G381700.1	Wheat	plasma membrane	58.44	59.52
Zm00001d025865_P001	Maize	plasma membrane	57.89	59.51
TraesCS6B01G257400.2	Wheat	plasma membrane	51.72	59.38
TraesCS6D01G211500.1	Wheat	plasma membrane	57.53	58.6
Os02t0624400-01	Rice	golgi	57.89	58.32
TraesCS6A01G223900.1	Wheat	plasma membrane	56.26	57.3
HORVU6Hr1G058670.11	Barley	endoplasmic reticulum, golgi	44.28	56.35
Os04t0517400-01	Rice	cytosol, plasma membrane	26.5	49.32
KRH57402	Soybean	extracellular, golgi, plasma membrane	17.97	20.75
KRH04125	Soybean	plasma membrane	17.6	20.38
KRH28078	Soybean	plasma membrane	17.06	19.92
KRH77365	Soybean	cytosol, peroxisome	11.25	18.79
KRH68559	Soybean	cytosol	11.07	17.18
KRH53878	Soybean	cytosol, golgi, mitochondrion	19.42	16.74
KRH64070	Soybean	plastid	19.24	16.59
KRH72868	Soybean	golgi	19.24	16.46
KRH15962	Soybean	golgi	17.6	16.41
KRH59555	Soybean	cytosol	19.06	16.41
KRH57436	Soybean	cytosol	17.6	16.33
KRH15352	Soybean	golgi	16.7	15.49
KRH05688	Soybean	golgi	16.33	15.2
KRH61283	Soybean	golgi	15.97	14.79
KRG96838	Soybean	golgi	14.7	14.65
KRH33949	Soybean	plastid	15.06	14.49
KRH43404	Soybean	cytosol	0.91	1.79

Protein Annotations

EMBL:ACUP02002123	EnsemblPlants:KRH68773	EnsemblPlantsGene:GLYMA_03G249500	EntrezGene:100800761	Gene3D:3.90.550.10	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	PANTHER:PTHR11183	PANTHER:PTHR11183:SF65
ProteinID:KRH68773	ProteinID:KRH68773.1	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF53448	TMHMM:TMhelix
UniParc:UPI0002958FC5	UniProt:K7KGY2	MapMan:5.4.13.2	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:44562326..44568436

Molecular Weight (calculated)

61696.0 Da

IEP (calculated)

8.083

GRAVY (calculated)

0.192

Length

551 amino acids

Sequence
(BLAST)

001: MKANGVTWWL CSILVCIVLV CVQFEGCVAS KTKKTDEAYV TLLYGDEFLL GVRVLGKSIR NTGSNKDMVV LVSDGVSDYA KSLLRADGWI VEMISLLANP
101: NRVRPKRFWG VYTKLKIFNM TDYKKVVYLD ADTIVVRNID DLFKCGKFCA NLKHSERLNS GVMVVEPSAT LFNDMMSKIK TTASYTGGDQ GFLNSYYSGF
201: PNAHVFEPNL SSEVLSSRPI PEMERLSTLY NADVGLYMLA NKWMVDENEL RVIHYTLGPL KPWDWWTSWL LKPVDVWQDV REQLDESLPG TGGGQNPKDS
301: FLVKFLFLLP FCALLFCCYH SFTKNQGYFS TLCRSSLCDQ VRHLYYRIRS NGPLAYTSIS ASTTNSVHQL LNGAQNKVPA YLGGISVCVC FMVAVVSLGL
401: ALLIVPQQVM PWTGLLLMYE WTFTIFFILF GGYIHLIYQW GKIVGSRAAS SLSQPGSDYD SEKFHQRQIS SCDSATWYYG LGMALLAIAA PSLPCLFGIT
501: ALFLRLGLMV VGGIILASFM TYASEHLAIR SFLKGIDERD NARNSSSCFL C

Best Arabidopsis Sequence Match ( AT5G18480.1 )
(BLAST)

001: MVRLKTSLWV LLLALVSIQL NGSFGSESSK VAYVTLLYGD EFLLGVRVLG KSIRDTGSTK DMVALVSDGV SDYSKKLLKA DGWKVEKISL LANPNQVHPT
101: RFWGVYTKLK IFNMTDYKKV VYLDADTIVV KNIEDLFKCS KFCANLKHSE RLNSGVMVVE PSEALFNDMM RKVKTLSSYT GGDQGFLNSY YPDFPNARVF
201: DPSVTPEVLK TRPVPAMERL STLYNADVGL YMLANKWMVD DSKLHVIHYT LGPLKPWDWW TAWLVKPVDA WHSIRVKLEE TLPGTGGGSN QHDELVVKFL
301: FLLPLCALLF CIYRSIQGRE GSLCWSSFSN QIRYLYYKVR SNGTLGYGGV STMSPSYQPH SGNAQSKVPQ HLGAVSVVVC FTAVLLSLGI SFAIVPRQIM
401: PWTGLVLVYE WTFTIFFLLF GVFLLFVHQH GKRIAIQSES SSLDDSAKVH QRAGGSCDVT TLYYGLGMAF LAIAAVSLPY ILGITALFTR LGLMVGLAII
501: LAAFMTYASE HLAVRWFLKG LEDRRDTTRS NSLCFLC

Arabidopsis Description

IPUT1Inositol phosphorylceramide glucuronosyltransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWB7]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.