Factsheet for PGSC0003DMT400064041

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plasma membrane 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g103540.2.1	Tomato	nucleus	94.21	96.76
KRH26322	Soybean	cytosol	12.81	57.03
VIT_12s0035g00970.t01	Wine grape	plastid	57.02	45.9
GSMUA_Achr6P12810_001	Banana	nucleus	27.19	44.03
KRH06073	Soybean	cytosol, nucleus, peroxisome	32.98	37.9
AT1G09810.1	Thale cress	nucleus	26.84	32.55
Bra019988.1-P	Field mustard	nucleus	26.67	30.34
CDX93476	Canola	nucleus	26.49	30.2
CDX94944	Canola	nucleus	26.32	30.18
PGSC0003DMT400061684	Potato	endoplasmic reticulum, plasma membrane	34.74	26.9
KXG21015	Sorghum	nucleus	28.07	24.5
Os05t0105600-01	Rice	cytosol	27.19	24.29
HORVU2Hr1G023660.2	Barley	nucleus	29.12	23.41
TraesCS2D01G012200.1	Wheat	cytosol	28.95	23.24
PGSC0003DMT400011739	Potato	cytosol	28.42	23.18
Os04t0129300-01	Rice	nucleus	27.37	23.11
TraesCS2A01G011400.1	Wheat	nucleus	28.77	23.07
TraesCS2B01G010200.1	Wheat	cytosol	28.6	22.83
Zm00001d048501_P002	Maize	cytosol	27.72	20.84
HORVU2Hr1G001810.8	Barley	cytosol	28.77	20.81

Protein Annotations

EnsemblPlants:PGSC0003DMT400064041	EnsemblPlantsGene:PGSC0003DMG400024891	EntrezGene:102591006	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF62
PFAM:PF04146	PFscan:PS50882	PGSC:PGSC0003DMG400024891	RefSeq:XP_006349328.1	SEG:seg	UniParc:UPI0002961C8C
UniProt:M1CBM8	MapMan:16.5.2.1	:	:	:	:

Description

Yth domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400024891]

Coordinates

chr1:+:80233826..80241389

Molecular Weight (calculated)

63192.6 Da

IEP (calculated)

8.729

GRAVY (calculated)

-0.721

Length

570 amino acids

Sequence
(BLAST)

001: MAGEKIIEKP EAVAPGLKSD PSNKLIEKDL VSKKDGKASD SVSSLGAVTG IKGGIDQPPA AEQGAYYPPT SYCDYYYPGY NGTYNQLDEQ AYFNAGVQSD
101: NGSLLYYMPG YNPYSAGFVG GDGKQPYPSS GYLQQPVSYG SDSMPCYTWG SPYCADITNS AAPKPGNVKS TFGRNGSVKS NGFNSTKTNS SFSSKSSTVL
201: FNPKSRPSTA MSNPPKSVHQ AQPFNPVNKF QSDVQSGGLM KGFHLVGDYP SYTSQNQGFF MPYDPINCQT NSRMWNGNYR IKPRGNFTRN GVFEATNELP
301: RGPRANGRSV PSKPSAEEDQ LVPTVQREKY NKEDFKTQYD NAKFYIIKSY SEDDIHKCVK YDVWSSTPNG NKKLDTAFVE AEAKSSGTGS SCPVFLFFSV
401: NGSGQFLGVA EMVGQVDFNR NMDFWQLDKW SGFFPLKWHI VKDVPNTQFR HIILENNDNR PVTYSRDTQE IGLKEGLEML NILKNYSEKT SILDDFNFYE
501: KREKVLKAKR SSKPAIQADV YEKADSLKQF KGGDKVLEEE LKTNSADPTA PLISLTKNLS INSRPFKSSV

Best Arabidopsis Sequence Match ( AT1G09810.1 )
(BLAST)

001: MATEKNTLDS EATFAQTVPA LDSTTKKQDE SPPKSTPSLT VTACANGSDV VSSQPNDNGQ AHTTDFRKGN HRDKNSSDVY ADSTLRGDRP KGSNCLSQTS
101: FSAPKPLGNF NGAGRLPPNT QAHAFRPPFK GKEAAGQFLT FSNQKTSCVP YSGYINGNSN NGFWDQRDHN KKPERNGESD YLVELKCGPR ANAKTRPPSE
201: SSPLKQNNSF ALALRREMYN LPDFQTDYED AKFFVIKSYS EDDVHKSIKY SVWSSTINGN KKLDAAFRDA ETKTLEDGKK RPIFLFFSVN ASRQFVGLAE
301: MVGYVDFNKD LDFWQVDKWS GFFPVEWHVV KDIPNWELRH IILDNNEDKP VTHTRDTHEI KLKEGLQMLS IFKKYSAVTF LLDDMDFYEE REKSLRAKKE
401: HKPATLRMDL FKEKDYDYEM EGNRRMNHQE RGYNWNRSSN SKTQASLVNQ TKYLSIRGYS GYKKNTGNST

Arabidopsis Description

ECT11Evolutionarily conserved C-terminal region 11 [Source:UniProtKB/TrEMBL;Acc:Q56XH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.