Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93476 | Canola | nucleus | 95.57 | 95.0 |
| AT1G09810.1 | Thale cress | nucleus | 72.43 | 76.6 |
| KRH26322 | Soybean | cytosol | 14.69 | 57.03 |
| CDY57677 | Canola | mitochondrion | 14.69 | 42.69 |
| GSMUA_Achr6P12810_001 | Banana | nucleus | 26.96 | 38.07 |
| CDY51902 | Canola | cytosol | 11.07 | 35.48 |
| CDY50448 | Canola | cytosol | 17.71 | 34.51 |
| CDY42891 | Canola | nucleus | 26.36 | 32.75 |
| CDY50867 | Canola | nucleus | 26.36 | 32.75 |
| CDY21154 | Canola | nucleus | 26.76 | 32.68 |
| CDY29972 | Canola | nucleus | 26.56 | 32.2 |
| CDX91541 | Canola | mitochondrion | 10.46 | 31.9 |
| CDY69959 | Canola | nucleus | 25.55 | 31.83 |
| CDY07437 | Canola | nucleus | 26.96 | 31.83 |
| CDY39299 | Canola | nucleus | 26.96 | 31.68 |
| CDY56132 | Canola | nucleus | 27.36 | 30.43 |
| CDY22270 | Canola | cytosol | 27.16 | 30.13 |
| CDX87395 | Canola | cytosol | 26.76 | 29.95 |
| CDY52966 | Canola | cytosol | 26.96 | 29.91 |
| CDY56809 | Canola | cytosol | 26.96 | 29.91 |
| CDX88524 | Canola | cytosol | 26.56 | 29.86 |
| KRH06073 | Soybean | cytosol, nucleus, peroxisome | 29.18 | 29.23 |
| CDX68000 | Canola | nucleus | 27.77 | 27.11 |
| CDX79309 | Canola | nucleus | 27.36 | 26.72 |
| CDY23602 | Canola | nucleus | 33.4 | 26.6 |
| Solyc01g103540.2.1 | Tomato | nucleus | 29.58 | 26.49 |
| CDY58572 | Canola | nucleus | 26.96 | 26.43 |
| PGSC0003DMT400064041 | Potato | cytosol | 30.18 | 26.32 |
| CDY32718 | Canola | nucleus | 27.97 | 26.28 |
| CDY24182 | Canola | nucleus | 28.57 | 26.25 |
| CDY02802 | Canola | nucleus | 28.17 | 26.22 |
| CDY05744 | Canola | cytosol | 6.64 | 26.19 |
| CDX88661 | Canola | nucleus | 26.76 | 26.08 |
| CDX75712 | Canola | nucleus | 33.2 | 26.03 |
| CDX82538 | Canola | nucleus | 33.0 | 25.62 |
| CDY43989 | Canola | nucleus | 32.6 | 25.55 |
| CDY07089 | Canola | nucleus | 31.79 | 24.84 |
| CDY24224 | Canola | nucleus | 30.58 | 24.76 |
| CDY23562 | Canola | nucleus | 30.78 | 24.68 |
| VIT_12s0035g00970.t01 | Wine grape | plastid | 34.61 | 24.29 |
| CDY44025 | Canola | nucleus | 30.38 | 24.28 |
| CDY43378 | Canola | nucleus | 29.78 | 24.1 |
| CDY67303 | Canola | nucleus | 24.95 | 23.8 |
| CDX90116 | Canola | nucleus | 24.95 | 23.8 |
| CDY11758 | Canola | nucleus, plastid | 25.35 | 22.74 |
| Os05t0105600-01 | Rice | cytosol | 27.97 | 21.79 |
| CDX93645 | Canola | nucleus | 26.56 | 21.57 |
| Os04t0129300-01 | Rice | nucleus | 28.97 | 21.33 |
| CDY43306 | Canola | cytosol | 25.96 | 21.04 |
| KXG21015 | Sorghum | nucleus | 27.16 | 20.67 |
| TraesCS2D01G012200.1 | Wheat | cytosol | 28.37 | 19.86 |
| TraesCS2A01G011400.1 | Wheat | nucleus | 28.37 | 19.83 |
| HORVU2Hr1G023660.2 | Barley | nucleus | 28.17 | 19.75 |
| TraesCS2B01G010200.1 | Wheat | cytosol | 27.77 | 19.33 |
| CDY60520 | Canola | cytosol | 5.03 | 18.94 |
| HORVU2Hr1G001810.8 | Barley | cytosol | 28.37 | 17.89 |
| Zm00001d048501_P002 | Maize | cytosol | 26.76 | 17.55 |
Protein Annotations
| EnsemblPlants:CDX94944 | EnsemblPlantsGene:GSBRNA2T00100427001 | Gene3D:3.10.590.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR007275 | InterPro:YTH_domain | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF56 | PFAM:PF04146 |
| PFscan:PS50882 | ProteinID:CDX94944 | ProteinID:CDX94944.1 | SEG:seg | UniParc:UPI0004EF1067 | MapMan:16.5.2.1 |
Description
BnaC05g07270D
Coordinates
chrLK031886:+:303350..306154
Molecular Weight (calculated)
56369.1 Da
IEP (calculated)
7.949
GRAVY (calculated)
-0.931
Length
497 amino acids
Sequence
(BLAST)
(BLAST)
001: MATERNAMDS ELQTVTDSDS TPKRHNEVFK ILLGELQTVT AADSTPTKHD ESPPTDDTSR TVTGSTTSSV TVSACDNGTD VVSSQPNGNG QAYATDFPKA
101: SHRDKNNSSY NNYQDSNLHG DRAVRSYCWS QTSMSSTNPP GNLNVYGQLP SFTQSHAFRP TFKGKQAAGQ FTKHANQKTS SVPYYGNGNT NSGFRDQRDE
201: HRKPERNGES DSLVEMKCGP RTSAKTHPPS DSSSSLKQNS SFVLDLRREM FNLPDFQTDY EDAKFFVIKS YSEDDVHKSI KYSVWSSTVN GNKKLDAAYR
301: DAEAKTLVDG KKRPIFLFFS VNASRQFVGL AEMVGYVDMN KDLDFWQVDK WCGFFPVEWH VVKDVPNWEL CHIVLDNNEG KAVTHTRDTQ EIKLREGLQM
401: LSIFKKFSAV TSLLDDMDFY EEREKSLRLK KEHKPATLRM DLFKEKDYDY ENGGNRRMNQ DRGYNWSRTQ QSLVNQTKNL SIRGGYSVSK NNTRNPR
101: SHRDKNNSSY NNYQDSNLHG DRAVRSYCWS QTSMSSTNPP GNLNVYGQLP SFTQSHAFRP TFKGKQAAGQ FTKHANQKTS SVPYYGNGNT NSGFRDQRDE
201: HRKPERNGES DSLVEMKCGP RTSAKTHPPS DSSSSLKQNS SFVLDLRREM FNLPDFQTDY EDAKFFVIKS YSEDDVHKSI KYSVWSSTVN GNKKLDAAYR
301: DAEAKTLVDG KKRPIFLFFS VNASRQFVGL AEMVGYVDMN KDLDFWQVDK WCGFFPVEWH VVKDVPNWEL CHIVLDNNEG KAVTHTRDTQ EIKLREGLQM
401: LSIFKKFSAV TSLLDDMDFY EEREKSLRLK KEHKPATLRM DLFKEKDYDY ENGGNRRMNQ DRGYNWSRTQ QSLVNQTKNL SIRGGYSVSK NNTRNPR
001: MATEKNTLDS EATFAQTVPA LDSTTKKQDE SPPKSTPSLT VTACANGSDV VSSQPNDNGQ AHTTDFRKGN HRDKNSSDVY ADSTLRGDRP KGSNCLSQTS
101: FSAPKPLGNF NGAGRLPPNT QAHAFRPPFK GKEAAGQFLT FSNQKTSCVP YSGYINGNSN NGFWDQRDHN KKPERNGESD YLVELKCGPR ANAKTRPPSE
201: SSPLKQNNSF ALALRREMYN LPDFQTDYED AKFFVIKSYS EDDVHKSIKY SVWSSTINGN KKLDAAFRDA ETKTLEDGKK RPIFLFFSVN ASRQFVGLAE
301: MVGYVDFNKD LDFWQVDKWS GFFPVEWHVV KDIPNWELRH IILDNNEDKP VTHTRDTHEI KLKEGLQMLS IFKKYSAVTF LLDDMDFYEE REKSLRAKKE
401: HKPATLRMDL FKEKDYDYEM EGNRRMNHQE RGYNWNRSSN SKTQASLVNQ TKYLSIRGYS GYKKNTGNST
101: FSAPKPLGNF NGAGRLPPNT QAHAFRPPFK GKEAAGQFLT FSNQKTSCVP YSGYINGNSN NGFWDQRDHN KKPERNGESD YLVELKCGPR ANAKTRPPSE
201: SSPLKQNNSF ALALRREMYN LPDFQTDYED AKFFVIKSYS EDDVHKSIKY SVWSSTINGN KKLDAAFRDA ETKTLEDGKK RPIFLFFSVN ASRQFVGLAE
301: MVGYVDFNKD LDFWQVDKWS GFFPVEWHVV KDIPNWELRH IILDNNEDKP VTHTRDTHEI KLKEGLQMLS IFKKYSAVTF LLDDMDFYEE REKSLRAKKE
401: HKPATLRMDL FKEKDYDYEM EGNRRMNHQE RGYNWNRSSN SKTQASLVNQ TKYLSIRGYS GYKKNTGNST
Arabidopsis Description
ECT11Evolutionarily conserved C-terminal region 11 [Source:UniProtKB/TrEMBL;Acc:Q56XH8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.