CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX86664
CDX89856
CDY15480

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79270.1	CDX86664	AT1G03900.1	21798944
AT1G79270.1	CDX89856	AT1G03900.1	21798944
AT1G79270.1	CDY15480	AT1G03900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56809	Canola	cytosol	95.98	95.98
Bra008406.1-P	Field mustard	cytosol	95.76	95.76
CDX87395	Canola	cytosol	82.59	83.33
CDX88524	Canola	cytosol	81.47	82.58
CDX68000	Canola	nucleus	87.28	76.82
CDX79309	Canola	nucleus	85.49	75.25
AT1G79270.1	Thale cress	nucleus	85.27	72.35
CDY57677	Canola	mitochondrion	17.86	46.78
CDY51902	Canola	cytosol	16.07	46.45
CDY50448	Canola	cytosol	22.99	40.39
KRH43645	Soybean	nucleus	51.34	39.72
KRH13810	Soybean	nucleus, plastid	50.67	39.34
VIT_19s0085g01100.t01	Wine grape	nucleus	51.56	39.09
CDX91541	Canola	mitochondrion	13.39	36.81
GSMUA_Achr9P06180_001	Banana	endoplasmic reticulum, plasma membrane	47.1	34.09
CDY69959	Canola	nucleus	29.46	33.08
CDY50867	Canola	nucleus	29.46	33.0
CDY42891	Canola	nucleus	29.46	33.0
GSMUA_Achr6P26690_001	Banana	cytosol	44.64	32.84
CDY07437	Canola	nucleus	29.91	31.83
CDY05744	Canola	cytosol	8.93	31.75
CDY29972	Canola	nucleus	29.02	31.71
CDY52966	Canola	cytosol	31.47	31.47
CDY21154	Canola	nucleus	28.57	31.45
Os01t0679900-01	Rice	nucleus	42.63	31.36
Zm00001d011602_P001	Maize	nucleus	42.63	31.36
CDY39299	Canola	nucleus	29.46	31.21
CDY56132	Canola	nucleus	31.03	31.1
CDY24182	Canola	nucleus	35.94	29.76
TraesCS3B01G301100.1	Wheat	nucleus	44.42	28.92
TraesCS3D01G267900.1	Wheat	nucleus	44.2	28.78
TraesCS3A01G267700.1	Wheat	nucleus	43.75	28.36
OQU87332	Sorghum	mitochondrion, nucleus	42.19	28.17
Zm00001d043860_P001	Maize	mitochondrion	41.74	27.7
CDY58572	Canola	nucleus	31.25	27.61
CDX88661	Canola	nucleus	31.25	27.45
CDX94944	Canola	nucleus	30.13	27.16
CDX93476	Canola	nucleus	30.13	27.0
CDY02802	Canola	nucleus	31.47	26.4
CDY23602	Canola	nucleus	36.38	26.12
CDY24224	Canola	nucleus	35.49	25.9
CDY23562	Canola	nucleus	35.71	25.81
CDY07089	Canola	nucleus	36.61	25.79
CDY43378	Canola	nucleus	35.27	25.73
CDY43989	Canola	nucleus	36.38	25.71
CDY32718	Canola	nucleus	30.36	25.71
CDY43306	Canola	cytosol	35.04	25.61
CDY44025	Canola	nucleus	35.49	25.56
CDX93645	Canola	nucleus	34.38	25.16
CDX82538	Canola	nucleus	35.94	25.16
HORVU3Hr1G062620.8	Barley	mitochondrion	43.3	25.03
CDX75712	Canola	nucleus	35.04	24.76
CDX90116	Canola	nucleus	28.79	24.76
CDY67303	Canola	nucleus	28.79	24.76
CDY11758	Canola	nucleus, plastid	28.12	22.74
CDY60520	Canola	cytosol	6.25	21.21

Protein Annotations

EnsemblPlants:CDY22270	EnsemblPlantsGene:GSBRNA2T00018721001	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF56	PFAM:PF04146
PFscan:PS50882	ProteinID:CDY22270	ProteinID:CDY22270.1	SEG:seg	UniParc:UPI0004EE4267	UniProt:A0A078G725
MapMan:16.5.2.1	:	:	:	:	:

Description

BnaC02g25740DBnaC02g25740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G725]

Coordinates

chrLK032129:+:374330..376892

Molecular Weight (calculated)

50580.1 Da

IEP (calculated)

6.872

GRAVY (calculated)

-0.702

Length

448 amino acids

Sequence
(BLAST)

001: MVKSLKVDPL AKVTASTTSM KSPSEPYYKI LETYQGLPCP YGGYYGFYYP GLDGSVGEAK DNGYYGYGTE VQYPVMQGED GSLIYMMPGF QSYDASPTSM
101: PITAGSVSSQ ALRSPMYAAQ GYYQNQYGYG DVSSPNYLWD VYGVASSNQP LKHNTSSSSH NYSSYYPKSK TSYGMGDRPK TPRKSSYAPL PIHNETEKVK
201: ARNKDNVNST EGECESCVGY VIKRDQYNLP SFQTKYEEAM FFVIKSYSED DIHKSIKYNV WSSTLNGNKK LDSAYQESQK KIAEKGGTCP VFLFFSVNAS
301: GQFCGVAEMT GRVDYEKSME FWQQDKWTGY FPVKWHIIKD VPNPQLRHVI LENNENKPVT NSRDTQEVRL PQGNEVLDIF KNYAAKTSIL DDFDFYENRE
401: KVLVQKKLRL HPVQIKKKEE ADVVADFKSM EISNTVKEGG TDLTGTVN

Best Arabidopsis Sequence Match ( AT1G79270.1 )
(BLAST)

001: MTSHVPKHPR KSFEDMVKNL KVDPLAKVTA STTSMVSAKE NKNQSEAEPS YYETLETYQG LPCPYGGYYG YYYPGLDGSV GEAKDNGYYG YGTEVQYPVM
101: QGENGSVIYL MPGFQSYDAS QTYMPINPVG VSSQALHSPM YAAQGYYQNQ FGYADVSSPT YLWDPVGDRY VYGVASYTPP LKQNISSSSH NHNNYYSKSK
201: NSFTGHGMGD RPKTPRKASQ NSYAPPPLLN QEKGRIAYPM DPVKKKSGAL NRDETEKAKA RTKENGTSMN DLANGQDHIT NGECESCSLD AEGNERSNGV
301: GSVIRRDQYN LPSFQTKYEE AIFFVIKSYS EDDIHKSIKY NVWSSTLNGN KKLDSAYQES QKKAADKSGK CPVFLFFSVN ASGQFCGVAE MIGRVDYEKS
401: MEFWQQDKWT GYFPVKWHII KDVPNPQLRH IILENNENKP VTNSRDTQEV RLPQGNEVLN IFKNYAAKTS ILDDFDFYEN REKVMVQKKL RFPPVLKKKE
501: EDLVADFKTM EMSNTVEEGN TELTGTVS

Arabidopsis Description

ECT8Evolutionarily conserved C-terminal region 8 [Source:UniProtKB/TrEMBL;Acc:Q9FPE7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.