Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plasma membrane 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_07s0005g03660.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G79270.1 | VIT_07s0005g03660.t01 | AT1G03900.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH13810 | Soybean | nucleus, plastid | 56.85 | 58.23 |
| KRH43645 | Soybean | nucleus | 56.68 | 57.86 |
| CDX87395 | Canola | cytosol | 39.42 | 52.48 |
| CDY56809 | Canola | cytosol | 39.59 | 52.23 |
| Bra035104.1-P | Field mustard | cytosol | 39.09 | 52.14 |
| Bra008406.1-P | Field mustard | cytosol | 39.42 | 52.01 |
| CDX88524 | Canola | cytosol | 38.75 | 51.81 |
| CDY22270 | Canola | cytosol | 39.09 | 51.56 |
| AT1G79270.1 | Thale cress | nucleus | 45.35 | 50.76 |
| GSMUA_Achr9P06180_001 | Banana | endoplasmic reticulum, plasma membrane | 52.45 | 50.08 |
| CDX68000 | Canola | nucleus | 42.64 | 49.51 |
| Bra003615.1-P | Field mustard | nucleus | 42.3 | 49.12 |
| CDX79309 | Canola | nucleus | 42.13 | 48.92 |
| GSMUA_Achr6P26690_001 | Banana | cytosol | 50.25 | 48.77 |
| Os01t0679900-01 | Rice | nucleus | 43.15 | 41.87 |
| Zm00001d011602_P001 | Maize | nucleus | 41.62 | 40.39 |
| TraesCS3B01G301100.1 | Wheat | nucleus | 43.65 | 37.5 |
| TraesCS3D01G267900.1 | Wheat | nucleus | 43.65 | 37.5 |
| TraesCS3A01G267700.1 | Wheat | nucleus | 43.82 | 37.48 |
| OQU87332 | Sorghum | mitochondrion, nucleus | 42.13 | 37.11 |
| Zm00001d043860_P001 | Maize | mitochondrion | 40.95 | 35.85 |
| VIT_01s0010g03690.t01 | Wine grape | cytosol | 32.49 | 33.57 |
| HORVU3Hr1G062620.8 | Barley | mitochondrion | 43.15 | 32.9 |
| VIT_06s0004g00200.t01 | Wine grape | nucleus | 37.23 | 31.21 |
| VIT_09s0054g01600.t01 | Wine grape | nucleus | 34.86 | 30.93 |
| VIT_08s0007g07450.t01 | Wine grape | cytosol | 35.36 | 30.12 |
| VIT_05s0020g00460.t01 | Wine grape | cytosol | 34.18 | 28.29 |
| VIT_12s0035g00970.t01 | Wine grape | plastid | 33.84 | 28.25 |
| VIT_11s0065g00160.t01 | Wine grape | nucleus | 31.47 | 25.31 |
Protein Annotations
| EntrezGene:100258644 | wikigene:100258644 | MapMan:16.5.2.1 | Gene3D:3.10.590.10 | EMBL:AM423479 | ProteinID:CAN75541 |
| ProteinID:CAN75541.1 | ProteinID:CBI24129 | ProteinID:CBI24129.3 | UniProt:D7T102 | EMBL:FN595503 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | InterPro:IPR007275 | EntrezGene:LOC100258644 |
| wikigene:LOC100258644 | PFAM:PF04146 | PFscan:PS50882 | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF55 | TIGR:TC65939 |
| TIGR:TC67600 | UniParc:UPI00019857DD | ArrayExpress:VIT_19s0085g01100 | EnsemblPlantsGene:VIT_19s0085g01100 | EnsemblPlants:VIT_19s0085g01100.t01 | unigene:Vvi.15479 |
| unigene:Vvi.3682 | RefSeq:XP_002268572 | RefSeq:XP_002268572.1 | InterPro:YTH_domain | SEG:seg | : |
Description
No Description!
Coordinates
chr19:-:23780102..23784708
Molecular Weight (calculated)
65083.9 Da
IEP (calculated)
5.756
GRAVY (calculated)
-0.581
Length
591 amino acids
Sequence
(BLAST)
(BLAST)
001: MASQFHPHNH ALEEMIRNLK VDPCSQLGGP PKEGSPSDAT SSGEATGSVK ESEVDQESLT TEPPPVMPPH TPSYYGYYYP GFDGSFAELD DQGLPLEIQY
101: PVMQADNGSL LYFTPGFQPG YSLYSPVVPV ATIGVDGQYA GQHPYPPSTV FAPAIASPGY IPTPLPYGSE LLPSSYLWDP SFLVGDGAYG SGYIGVPDIA
201: DSKQNLSSPS HPRNPPSKSF SLSEFNSPLE VKGSSPSSVH GMRSQFKSAN KASQYGSPFQ PDDALGKDYF PIAKLQSYNQ GKGGLLYPNS PVNLKANSRG
301: WVSTEKLKMR SKANAISDFG VLEQNHGPRT ASAKGALVSG GNDAGSLSAD GNGKNNCIAS LIRRDQYNLP DFPTKYDHAF FFVIKSYSED DIHKSIKYNV
401: WASTPNGNKR LDGAYQEAKE RMGDRGSKCP VFLFFSVNAS GQFCGVAEMI GRVDFNKNMD FWQQDKWNGF FPVKWHIIKD VPNPQLRHII LENNDNKPVT
501: NSRDTQEVRF PQGIEILNIF KNYVSKTSIL DDFDFYESRQ KVMQDKKIKP SMPHFDHLQQ KAEDVITGFQ AVDLSAVEKI EEPQVGDKAN E
101: PVMQADNGSL LYFTPGFQPG YSLYSPVVPV ATIGVDGQYA GQHPYPPSTV FAPAIASPGY IPTPLPYGSE LLPSSYLWDP SFLVGDGAYG SGYIGVPDIA
201: DSKQNLSSPS HPRNPPSKSF SLSEFNSPLE VKGSSPSSVH GMRSQFKSAN KASQYGSPFQ PDDALGKDYF PIAKLQSYNQ GKGGLLYPNS PVNLKANSRG
301: WVSTEKLKMR SKANAISDFG VLEQNHGPRT ASAKGALVSG GNDAGSLSAD GNGKNNCIAS LIRRDQYNLP DFPTKYDHAF FFVIKSYSED DIHKSIKYNV
401: WASTPNGNKR LDGAYQEAKE RMGDRGSKCP VFLFFSVNAS GQFCGVAEMI GRVDFNKNMD FWQQDKWNGF FPVKWHIIKD VPNPQLRHII LENNDNKPVT
501: NSRDTQEVRF PQGIEILNIF KNYVSKTSIL DDFDFYESRQ KVMQDKKIKP SMPHFDHLQQ KAEDVITGFQ AVDLSAVEKI EEPQVGDKAN E
001: MTSHVPKHPR KSFEDMVKNL KVDPLAKVTA STTSMVSAKE NKNQSEAEPS YYETLETYQG LPCPYGGYYG YYYPGLDGSV GEAKDNGYYG YGTEVQYPVM
101: QGENGSVIYL MPGFQSYDAS QTYMPINPVG VSSQALHSPM YAAQGYYQNQ FGYADVSSPT YLWDPVGDRY VYGVASYTPP LKQNISSSSH NHNNYYSKSK
201: NSFTGHGMGD RPKTPRKASQ NSYAPPPLLN QEKGRIAYPM DPVKKKSGAL NRDETEKAKA RTKENGTSMN DLANGQDHIT NGECESCSLD AEGNERSNGV
301: GSVIRRDQYN LPSFQTKYEE AIFFVIKSYS EDDIHKSIKY NVWSSTLNGN KKLDSAYQES QKKAADKSGK CPVFLFFSVN ASGQFCGVAE MIGRVDYEKS
401: MEFWQQDKWT GYFPVKWHII KDVPNPQLRH IILENNENKP VTNSRDTQEV RLPQGNEVLN IFKNYAAKTS ILDDFDFYEN REKVMVQKKL RFPPVLKKKE
501: EDLVADFKTM EMSNTVEEGN TELTGTVS
101: QGENGSVIYL MPGFQSYDAS QTYMPINPVG VSSQALHSPM YAAQGYYQNQ FGYADVSSPT YLWDPVGDRY VYGVASYTPP LKQNISSSSH NHNNYYSKSK
201: NSFTGHGMGD RPKTPRKASQ NSYAPPPLLN QEKGRIAYPM DPVKKKSGAL NRDETEKAKA RTKENGTSMN DLANGQDHIT NGECESCSLD AEGNERSNGV
301: GSVIRRDQYN LPSFQTKYEE AIFFVIKSYS EDDIHKSIKY NVWSSTLNGN KKLDSAYQES QKKAADKSGK CPVFLFFSVN ASGQFCGVAE MIGRVDYEKS
401: MEFWQQDKWT GYFPVKWHII KDVPNPQLRH IILENNENKP VTNSRDTQEV RLPQGNEVLN IFKNYAAKTS ILDDFDFYEN REKVMVQKKL RFPPVLKKKE
501: EDLVADFKTM EMSNTVEEGN TELTGTVS
Arabidopsis Description
ECT8Evolutionarily conserved C-terminal region 8 [Source:UniProtKB/TrEMBL;Acc:Q9FPE7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.