CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX86664
CDX89856
CDY15480

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79270.1	CDX86664	AT1G03900.1	21798944
AT1G79270.1	CDX89856	AT1G03900.1	21798944
AT1G79270.1	CDY15480	AT1G03900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035104.1-P	Field mustard	cytosol	96.62	96.84
CDX88524	Canola	cytosol	95.72	96.15
CDY56809	Canola	cytosol	84.68	83.93
CDY22270	Canola	cytosol	83.33	82.59
CDX68000	Canola	nucleus	86.71	75.64
CDX79309	Canola	nucleus	85.36	74.46
AT1G79270.1	Thale cress	nucleus	84.01	70.64
CDY51902	Canola	cytosol	16.67	47.74
CDY57677	Canola	mitochondrion	17.34	45.03
KRH43645	Soybean	nucleus	52.48	40.24
KRH13810	Soybean	nucleus, plastid	52.25	40.21
CDY50448	Canola	cytosol	22.97	40.0
VIT_19s0085g01100.t01	Wine grape	nucleus	52.48	39.42
CDX91541	Canola	mitochondrion	13.29	36.2
GSMUA_Achr9P06180_001	Banana	endoplasmic reticulum, plasma membrane	46.85	33.6
CDY05744	Canola	cytosol	9.46	33.33
GSMUA_Achr6P26690_001	Banana	cytosol	44.82	32.68
CDY50867	Canola	nucleus	29.28	32.5
CDY42891	Canola	nucleus	29.28	32.5
CDY69959	Canola	nucleus	28.83	32.08
Os01t0679900-01	Rice	nucleus	43.47	31.69
CDY07437	Canola	nucleus	29.95	31.59
CDY39299	Canola	nucleus	29.5	30.97
CDY52966	Canola	cytosol	31.08	30.8
CDY29972	Canola	nucleus	28.38	30.73
CDY56132	Canola	nucleus	30.63	30.43
Zm00001d011602_P001	Maize	nucleus	41.67	30.38
CDY21154	Canola	nucleus	27.7	30.22
CDY24182	Canola	nucleus	35.81	29.39
TraesCS3B01G301100.1	Wheat	nucleus	45.27	29.22
TraesCS3D01G267900.1	Wheat	nucleus	45.05	29.07
TraesCS3A01G267700.1	Wheat	nucleus	44.37	28.51
OQU87332	Sorghum	mitochondrion, nucleus	42.34	28.02
Zm00001d043860_P001	Maize	mitochondrion	41.22	27.11
CDY43378	Canola	nucleus	37.16	26.87
CDX94944	Canola	nucleus	29.95	26.76
CDY24224	Canola	nucleus	36.94	26.71
CDX88661	Canola	nucleus	30.63	26.67
CDY23562	Canola	nucleus	37.16	26.61
CDY58572	Canola	nucleus	30.18	26.43
CDX93476	Canola	nucleus	29.73	26.4
CDY44025	Canola	nucleus	36.94	26.37
CDY23602	Canola	nucleus	36.71	26.12
CDY43306	Canola	cytosol	36.04	26.1
CDY02802	Canola	nucleus	30.86	25.66
CDX93645	Canola	nucleus	35.36	25.65
CDY43989	Canola	nucleus	36.49	25.55
CDY67303	Canola	nucleus	29.73	25.34
CDX90116	Canola	nucleus	29.73	25.34
CDY07089	Canola	nucleus	36.04	25.16
CDY32718	Canola	nucleus	29.95	25.14
HORVU3Hr1G062620.8	Barley	mitochondrion	43.69	25.03
CDX82538	Canola	nucleus	35.81	24.84
CDX75712	Canola	nucleus	35.14	24.61
CDY11758	Canola	nucleus, plastid	29.05	23.29
CDY60520	Canola	cytosol	5.86	19.7

Protein Annotations

EnsemblPlants:CDX87395	EnsemblPlantsGene:GSBRNA2T00146369001	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	ncoils:Coil	PANTHER:PTHR12357	PANTHER:PTHR12357:SF56
PFAM:PF04146	PFscan:PS50882	ProteinID:CDX87395	ProteinID:CDX87395.1	SEG:seg	UniParc:UPI0004EDE9BE
MapMan:16.5.2.1	:	:	:	:	:

Description

BnaA07g34780D

Coordinates

chrLK031850:-:430404..432420

Molecular Weight (calculated)

50260.6 Da

IEP (calculated)

6.388

GRAVY (calculated)

-0.737

Length

444 amino acids

Sequence
(BLAST)

001: MVKNLKVDPL AKAVSASTTS MKSRQSEPYY GTLETYQGLP CPYGGYYGFY YPSLDGSVGE AKDNGYYSYG TEAQYPVMQG ENGSLVYMMP GFQSYDVSST
101: YMPISPACVS SQALHSPMYA AQGYYQNQYG YGDVSSPTYL WEDKYAYGVA SSNQPLKQKI SSSSSYNHSN YYSKSKTSFT SQGMGARPKK SGALNRDETE
201: KAKARNKDNV NSTEGECESC VGSVIKRDQY NLPSFETKYE EAMFFVIKSY SEDDIHKSIK YSVWSSTLNG NKKLDSAYQE SLKKVSEKGG TCPVFLFFSV
301: NASGQFCGVA EMTGRVDYEK SMDFWQQDKW TGYFPVKWHI IKDVPNPQLR HVILENNENK PVTNSRDTQE VRLPQGSEVL NIFKNYAAKT SILDDFDFYE
401: NREKVMVQKK LRFPPAQIKK KEEEEEELVA DLQTMEISKS EKLT

Best Arabidopsis Sequence Match ( AT3G17330.2 )
(BLAST)

001: MVSNSSTDSL VANGGQSDGR GSMQRNGSAI AGLPKDAPKS TTTGQYKQPG IPKNVSTTAS AHSLQGKTAY ANTLLPYGKS DIANGVSSIA SYSYKPCSKI
101: YDARGDNNTT GSTYTSEQNR GSRTRRSRNQ LIVKAYTTKA GNADAEGNIV INPDRYNKED FSIEYSDARF FVIKSYSEDD VHKSIKYGVW SSTLNGNKKL
201: QSVYEDAQRI ATEKSRECPI FLFFSVNSSG LFCGVAEMTG PVSFDRDMDF WQQDKWSGSF PVKWHIIKDV PNSYFRHIIL HNNENKPVTN SRDTQEIILK
301: QGLEVLKLFK HHAEKTSLLD DFMYYEDRQR LMQEERARLP FRTFRRPFPV LNLDFSDRSK KSSKDVVKKP SVTSAETKVV QLKNSDGDEK SNTQEATDDS
401: TPSTLKFGSL AIKPTAGTTF NPTQPKPKPT PSLGSDHKSD SSEEVTGSLA DDIVSVGSLP IKVKGSKELS SKIAAVGTSP LSTQDQFRSK PGF

Arabidopsis Description

ECT6At3g17330 [Source:UniProtKB/TrEMBL;Acc:Q1JPL5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.