Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY56132 | Canola | nucleus | 95.98 | 96.2 |
| CDY07437 | Canola | nucleus | 72.1 | 76.72 |
| CDY39299 | Canola | nucleus | 72.32 | 76.6 |
| CDY57677 | Canola | mitochondrion | 27.01 | 70.76 |
| CDY50448 | Canola | cytosol | 38.17 | 67.06 |
| CDX91541 | Canola | mitochondrion | 24.33 | 66.87 |
| AT5G61020.1 | Thale cress | cytosol | 64.96 | 58.79 |
| CDY51902 | Canola | cytosol | 15.4 | 44.52 |
| CDY21154 | Canola | nucleus | 37.28 | 41.03 |
| CDY69959 | Canola | nucleus | 36.38 | 40.85 |
| CDY50867 | Canola | nucleus | 36.16 | 40.5 |
| CDY42891 | Canola | nucleus | 36.16 | 40.5 |
| CDY29972 | Canola | nucleus | 37.05 | 40.49 |
| GSMUA_Achr4P14820_001 | Banana | cytosol | 26.56 | 35.95 |
| CDY05744 | Canola | cytosol | 10.04 | 35.71 |
| GSMUA_Achr7P01490_001 | Banana | nucleus | 42.86 | 34.29 |
| CDX82538 | Canola | nucleus | 48.21 | 33.75 |
| CDX75712 | Canola | nucleus | 47.54 | 33.6 |
| EER93313 | Sorghum | cytosol | 42.86 | 33.57 |
| CDY23602 | Canola | nucleus | 46.21 | 33.17 |
| CDY43989 | Canola | nucleus | 46.65 | 32.97 |
| VIT_08s0007g07450.t01 | Wine grape | cytosol | 50.67 | 32.71 |
| CDY07089 | Canola | nucleus | 46.43 | 32.7 |
| CDY24182 | Canola | nucleus | 39.29 | 32.53 |
| GSMUA_Achr4P22630_001 | Banana | nucleus | 44.87 | 32.37 |
| GSMUA_Achr4P28430_001 | Banana | nucleus, plastid | 43.75 | 31.87 |
| GSMUA_Achr4P21380_001 | Banana | nucleus | 46.43 | 31.61 |
| CDY22270 | Canola | cytosol | 31.47 | 31.47 |
| TraesCS5A01G431200.1 | Wheat | nucleus | 41.29 | 31.41 |
| CDY56809 | Canola | cytosol | 31.25 | 31.25 |
| CDX87395 | Canola | cytosol | 30.8 | 31.08 |
| TraesCS5D01G439100.1 | Wheat | nucleus | 40.62 | 30.95 |
| KRH70155 | Soybean | nucleus | 43.3 | 30.79 |
| CDX88524 | Canola | cytosol | 30.36 | 30.77 |
| GSMUA_Achr5P02830_001 | Banana | cytosol | 41.96 | 30.52 |
| Os07t0170300-01 | Rice | plasma membrane | 40.85 | 30.4 |
| TraesCS5B01G433000.1 | Wheat | cytosol | 40.18 | 30.2 |
| KRG94807 | Soybean | nucleus | 44.2 | 30.05 |
| TraesCS5D01G439200.1 | Wheat | cytosol | 42.86 | 29.91 |
| TraesCS5A01G431100.1 | Wheat | cytosol | 42.86 | 29.91 |
| EER93461 | Sorghum | nucleus | 43.97 | 29.89 |
| TraesCS5A01G386600.2 | Wheat | nucleus | 44.2 | 29.86 |
| GSMUA_Achr7P27220_001 | Banana | cytosol | 43.97 | 29.8 |
| TraesCS5B01G432900.2 | Wheat | extracellular | 43.08 | 29.78 |
| TraesCS5B01G391500.1 | Wheat | nucleus | 43.97 | 29.76 |
| KRH06717 | Soybean | nucleus | 43.97 | 29.71 |
| HORVU5Hr1G094950.6 | Barley | cytosol, nucleus | 43.97 | 29.62 |
| TraesCS5D01G396400.3 | Wheat | nucleus | 43.75 | 29.61 |
| Zm00001d034005_P003 | Maize | plasma membrane | 43.08 | 29.24 |
| Os03t0748000-01 | Rice | plasma membrane | 43.08 | 29.2 |
| Os03t0158500-01 | Rice | nucleus | 45.31 | 28.71 |
| CDX79309 | Canola | nucleus | 32.37 | 28.49 |
| KXG34475 | Sorghum | cytosol | 41.07 | 28.48 |
| CDX68000 | Canola | nucleus | 32.14 | 28.29 |
| HORVU5Hr1G104380.1 | Barley | plastid | 41.52 | 28.14 |
| KXG40139 | Sorghum | plastid | 44.64 | 28.13 |
| Zm00001d007890_P002 | Maize | mitochondrion | 39.96 | 27.41 |
| HORVU5Hr1G104390.3 | Barley | plastid | 41.52 | 27.03 |
| CDY44025 | Canola | nucleus | 37.5 | 27.01 |
| CDX94944 | Canola | nucleus | 29.91 | 26.96 |
| CDY23562 | Canola | nucleus | 37.28 | 26.94 |
| CDY43378 | Canola | nucleus | 36.83 | 26.87 |
| CDY24224 | Canola | nucleus | 36.38 | 26.55 |
| Zm00001d048424_P003 | Maize | plastid | 43.75 | 26.49 |
| CDY67303 | Canola | nucleus | 30.58 | 26.3 |
| CDX90116 | Canola | nucleus | 30.58 | 26.3 |
| CDX93476 | Canola | nucleus | 29.24 | 26.2 |
| TraesCS4D01G273200.4 | Wheat | cytosol | 41.96 | 26.0 |
| Zm00001d018896_P002 | Maize | mitochondrion | 40.85 | 25.92 |
| HORVU4Hr1G072940.4 | Barley | cytosol | 42.86 | 25.88 |
| TraesCS4A01G031600.2 | Wheat | cytosol | 41.96 | 25.79 |
| TraesCS4B01G274500.2 | Wheat | plastid | 43.53 | 25.42 |
| CDY11758 | Canola | nucleus, plastid | 30.58 | 24.73 |
| Zm00001d027731_P012 | Maize | plastid | 43.53 | 24.28 |
| CDY58572 | Canola | nucleus | 27.01 | 23.87 |
| CDY02802 | Canola | nucleus | 28.12 | 23.6 |
| CDX88661 | Canola | nucleus | 26.79 | 23.53 |
| CDY32718 | Canola | nucleus | 27.46 | 23.25 |
| CDY60520 | Canola | cytosol | 6.7 | 22.73 |
| CDX93645 | Canola | nucleus | 29.91 | 21.9 |
| CDY43306 | Canola | cytosol | 29.91 | 21.86 |
Protein Annotations
| EnsemblPlants:CDY52966 | EnsemblPlantsGene:GSBRNA2T00008237001 | Gene3D:3.10.590.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR007275 | InterPro:YTH_domain | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF56 | PFAM:PF04146 |
| PFscan:PS50882 | ProteinID:CDY52966 | ProteinID:CDY52966.1 | SEG:seg | UniParc:UPI0004EE7CEE | UniProt:A0A078IT29 |
| MapMan:16.5.2.1 | : | : | : | : | : |
Description
BnaCnng23940DBnaCnng23940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IT29]
Coordinates
chrLK033146:+:66981..69376
Molecular Weight (calculated)
50291.6 Da
IEP (calculated)
8.194
GRAVY (calculated)
-0.803
Length
448 amino acids
Sequence
(BLAST)
(BLAST)
001: MATTISPSDQ AADLLHNLSL DPETMAKVPD TGNKDVYGGT KSGKTNLLPT NVRAVTGLNQ KKLAFNQKGS YGTYPTGYYT PPYQYPRYGY DMNYASGKTN
101: TTLQYPHLST YQGRSGSYGQ SFGYNMDSMY SMYGPYMNGY GYDSYGYGTY KQTPSWYKTM AYGFSGYGKE NFAGLDELNR GPRAKGFKIG QESSQPETLK
201: EQEIGKKTSE DVSLPDSKDY NKEDFSETYS NAKLFVIKSY SEDDIHKSIK YNVWSSTPNG NKKLDAAYNE AKEKSNGSCP VFLMFSVNTS GQFVGLAEMV
301: GPVDFNQTVE YWQQDKWIGC FPVKWHIVKD IPNSSLRHIT LENNENKPVT NSRDTQEVTL EQGMKVIKIF KEHASKACIL DDFAFYESRE KIIKEGKKKQ
401: QQYKIKQALA AIDKKAIPKD ETKETRSTAP QVASEISQND VAEVASAC
101: TTLQYPHLST YQGRSGSYGQ SFGYNMDSMY SMYGPYMNGY GYDSYGYGTY KQTPSWYKTM AYGFSGYGKE NFAGLDELNR GPRAKGFKIG QESSQPETLK
201: EQEIGKKTSE DVSLPDSKDY NKEDFSETYS NAKLFVIKSY SEDDIHKSIK YNVWSSTPNG NKKLDAAYNE AKEKSNGSCP VFLMFSVNTS GQFVGLAEMV
301: GPVDFNQTVE YWQQDKWIGC FPVKWHIVKD IPNSSLRHIT LENNENKPVT NSRDTQEVTL EQGMKVIKIF KEHASKACIL DDFAFYESRE KIIKEGKKKQ
401: QQYKIKQALA AIDKKAIPKD ETKETRSTAP QVASEISQND VAEVASAC
001: MANPDHVSDV LHNLSIDPTT KALAPDSETK GAYGGNGNDF LLNDELVEAT KIGKPSLLSK DGGVTKDKGS NLKKLGYQSA AYNAKGSYGK GAYAYGYYPP
101: AYQYPRHGYT GSYASGKTNL QYQYLTQQGR SAGNGQSYGG YMDNIYSNYG MCGPYTNGYG YGSYGYDSWK YMPNWYAVNN TYKPRNGYHG YGKENIEGLN
201: EMNRGPRAKG FNSQDGSKVM AVSLKEQRVT ETEKLSEDVS LLDPKDYNKI DFPETYTEAK FYVIKSYSED DIHKSIKYSV WSSTPNGNKK LDASYNEAKQ
301: KSDGCPVFLL FSVNTSGQFV GLAEMVGPVD FNKTVEYWQQ DKWIGCFPVK WHFVKDIPNS SLRHITLENN ENKPVTNSRD TQEVKLEQGI KVIKIFKDHA
401: SKTCILDDFE FYENRQKIIQ ERKSKHLQIK KQTLVANADK GVMSKINLVK PQESTTASED AAALGVAAEV TKESKVVKET ELPVEKNAVA TAC
101: AYQYPRHGYT GSYASGKTNL QYQYLTQQGR SAGNGQSYGG YMDNIYSNYG MCGPYTNGYG YGSYGYDSWK YMPNWYAVNN TYKPRNGYHG YGKENIEGLN
201: EMNRGPRAKG FNSQDGSKVM AVSLKEQRVT ETEKLSEDVS LLDPKDYNKI DFPETYTEAK FYVIKSYSED DIHKSIKYSV WSSTPNGNKK LDASYNEAKQ
301: KSDGCPVFLL FSVNTSGQFV GLAEMVGPVD FNKTVEYWQQ DKWIGCFPVK WHFVKDIPNS SLRHITLENN ENKPVTNSRD TQEVKLEQGI KVIKIFKDHA
401: SKTCILDDFE FYENRQKIIQ ERKSKHLQIK KQTLVANADK GVMSKINLVK PQESTTASED AAALGVAAEV TKESKVVKET ELPVEKNAVA TAC
Arabidopsis Description
ECT3ECT3 [Source:UniProtKB/TrEMBL;Acc:A0A178UM32]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.