CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plasma membrane 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER97615
EES00612
OQU77359

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13460.1	EER97615	AT3G17510.1	16113215
AT3G13460.1	EES00612	AT3G17510.1	16113215
AT3G13460.1	OQU77359	AT3G17510.1	16113215

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007890_P002	Maize	mitochondrion	87.77	86.83
Zm00001d018896_P002	Maize	mitochondrion	88.24	80.74
Os07t0170300-01	Rice	plasma membrane	64.4	69.1
EER93313	Sorghum	cytosol	47.21	53.32
CDY57677	Canola	mitochondrion	13.78	52.05
Bra004105.1-P	Field mustard	nucleus	28.02	45.71
CDY07437	Canola	nucleus	28.79	44.18
CDY39299	Canola	nucleus	28.64	43.74
CDY50448	Canola	cytosol	17.18	43.53
Bra008509.1-P	Field mustard	cytosol	28.17	43.03
CDX91541	Canola	mitochondrion	10.84	42.94
CDY56132	Canola	nucleus	28.64	41.39
Bra031960.1-P	Field mustard	nucleus	25.23	41.16
CDY52966	Canola	cytosol	28.48	41.07
CDY69959	Canola	nucleus	25.23	40.85
CDY21154	Canola	nucleus	25.7	40.79
CDY42891	Canola	nucleus	25.23	40.75
CDY50867	Canola	nucleus	25.23	40.75
AT1G55500.5	Thale cress	cytosol	38.08	40.66
AT3G03950.3	Thale cress	cytosol	26.93	40.65
Bra036423.1-P	Field mustard	nucleus	25.39	40.39
CDY23602	Canola	nucleus	39.01	40.38
CDY29972	Canola	nucleus	25.54	40.24
CDY43989	Canola	nucleus	39.47	40.22
Bra027432.1-P	Field mustard	nucleus	39.47	40.22
VIT_06s0004g00200.t01	Wine grape	nucleus	43.65	40.0
VIT_08s0007g07450.t01	Wine grape	cytosol	42.72	39.77
Bra001506.1-P	Field mustard	nucleus	39.32	39.75
CDX82538	Canola	nucleus	39.16	39.53
CDX75712	Canola	nucleus	38.39	39.12
CDY24182	Canola	nucleus	32.66	39.0
CDY07089	Canola	nucleus	38.24	38.84
AT3G13460.1	Thale cress	cytosol	40.09	38.83
Bra039400.1-P	Field mustard	nucleus	37.93	38.52
EER93461	Sorghum	nucleus	39.16	38.39
KRH59123	Soybean	nucleus	41.33	37.71
AT5G61020.1	Thale cress	cytosol	28.79	37.58
KRH43005	Soybean	nucleus	41.02	37.48
Solyc01g028860.2.1	Tomato	nucleus	40.25	36.83
Bra038524.1-P	Field mustard	cytosol	12.54	36.0
Bra018951.1-P	Field mustard	cytosol	14.09	35.14
PGSC0003DMT400061684	Potato	endoplasmic reticulum, plasma membrane	39.94	35.05
KXG40139	Sorghum	plastid	38.39	34.88
KRG94807	Soybean	nucleus	35.45	34.75
Bra014253.1-P	Field mustard	cytosol	15.94	34.56
KRH06717	Soybean	nucleus	35.29	34.39
KRH70155	Soybean	nucleus	32.82	33.65
KXG27074	Sorghum	cytosol	26.63	31.16
KXG25412	Sorghum	cytosol	30.03	30.36
EES14722	Sorghum	nucleus	27.71	30.13
OQU87332	Sorghum	mitochondrion, nucleus	27.24	26.23
KXG21015	Sorghum	nucleus	25.08	24.81
KXG24185	Sorghum	nucleus	22.91	20.19
OQU77486	Sorghum	cytosol	19.81	18.08

Protein Annotations

MapMan:16.5.2.1	Gene3D:3.10.590.10	EntrezGene:8060706	UniProt:A0A1B6Q971	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
InterPro:IPR007275	EnsemblPlants:KXG34475	ProteinID:KXG34475	ProteinID:KXG34475.2	PFAM:PF04146	PFscan:PS50882
PANTHER:PTHR12357	PANTHER:PTHR12357:SF34	EnsemblPlantsGene:SORBI_3002G047000	UniParc:UPI0001A84236	RefSeq:XP_002461519.1	InterPro:YTH_domain
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:4379219..4383210

Molecular Weight (calculated)

70718.5 Da

IEP (calculated)

6.659

GRAVY (calculated)

-0.786

Length

646 amino acids

Sequence
(BLAST)

001: MAAVGSLQPG MEALHVQGDY KDAPPPAKAS VVAAAVESLQ PAMESLHVQD FKDAAAAPAK GATAVGSLQP GAENLQAQDY KDASMYYGAY PAYAYGAYGG
101: WGEYSTYLAD GAQSPTAGTY ADMYYGYAPY GVATLGSDGQ IYGSQSYDYQ YPSTYNKQQN STAKLSTNGK SEKLAPAPQG DVSTVGVDEV KGLKNSNSTL
201: KADKNTPSSN GSYGRSSARS GSYQNQTSWP HYPYYSSEMF SDKQQKFTSN RNSTALNAKT KGQSRNQNTR QYPHLMGLQT PTSPSVYSAN GIYGYDGSYG
301: AGLWYGSHMY SSGLYGGWNS LYDGKYRTRG RGNNGYYVYG NGNLDGFNEL KRGPRSGMYK NQLGLGATTE VPAKEQDLSV DDGSHPAMKD QYNQADFAET
401: YSDAKFFIIK SYSEDDVHKS VKYNVWASTP NGNKKLDAAY QEAKEKSSET PVFLLFSVNA SGQFVGLAEM VGRVDFDKTV EHWQQDKWTG CFPVKWHIVK
501: DVPNSLLKHI ILENNENKPV TNSRDTHEVK FEQGLQVLKI FKDHVCKTSI LDDFGFYDNR EKLMQERKAK QQQSLKKVID VKLPNSTDTE KSLKGETGST
601: ELTEADVLNK ELSLDKAGEK NGEKGNDVAP QDLKSPTEKL AGPNGC

Best Arabidopsis Sequence Match ( AT1G55500.1 )
(BLAST)

001: MDSNGQVPSF DRSLSPMLPS DALDPSVFYV PNVYQQPYYY GYGSDYTGYT NSESVDMTSG YGYAAFPYSP ATSPAPQLGG DGQLYGAQQY QYPFPLTASS
101: GPFASSVPAS TQSKLSTNKA ANSASAGIPK GMNGSAPVKP LNQSALYGNS ALGGGLAAGY QDPRYSYDGF YTPVSWHDGS NFSDVQRSVS GSGVASSYSK
201: ANNNVPATRN QNSSSNSHYT SMYQPASMTG YAAQGYYDRV SPNKSYGQYG STVRSGMGYG SSGYGSRTNE RGWLNTDNKY RSRGRGNSYF YGNENIDGLN
301: ELNRGPRAKG TKATEEVSSE EVKKQTFDES NTEETVTCVL PDREECNRDD FPVEYKDAKF FIIKSYSEDD VHKSIKYNVW ASTPNGNKKL DAAYQEAQQK
401: SSGCPVFLFF SVNASGQFIG LAEMKGPVDF NKNIEYWQQD KWTGSFPLKW HILKDVPNSL LKHITLEYNE NKPVTNSRDT QEVKLEQGLK VVKIFKEHNS
501: KTCILDDFSF YEARQKTILE KKAKQQQSQK QVWEGKTNDE KPGTVDSTM

Arabidopsis Description

ECT4evolutionarily conserved C-terminal region 4 [Source:TAIR;Acc:AT1G55500]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.