Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G13460.1 | CDX75921 | AT3G17510.1 | 16113215 |
| AT3G13460.1 | CDX82366 | AT3G17510.1 | 16113215 |
| AT3G13460.1 | CDX92136 | AT3G17510.1 | 16113215 |
| AT3G13460.1 | CDX95849 | AT3G17510.1 | 16113215 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra027432.1-P | Field mustard | nucleus | 98.58 | 98.58 |
| CDY23602 | Canola | nucleus | 95.11 | 96.63 |
| CDX82538 | Canola | nucleus | 84.86 | 84.06 |
| CDX75712 | Canola | nucleus | 82.65 | 82.65 |
| CDY07089 | Canola | nucleus | 82.65 | 82.39 |
| CDY24182 | Canola | nucleus | 68.93 | 80.78 |
| AT3G13460.1 | Thale cress | cytosol | 83.6 | 79.46 |
| CDY57677 | Canola | mitochondrion | 14.51 | 53.8 |
| VIT_06s0004g00200.t01 | Wine grape | nucleus | 59.62 | 53.62 |
| KRH43005 | Soybean | nucleus | 58.99 | 52.9 |
| KRH59123 | Soybean | nucleus | 58.2 | 52.12 |
| Solyc01g028860.2.1 | Tomato | nucleus | 56.15 | 50.42 |
| CDY05744 | Canola | cytosol | 9.94 | 50.0 |
| CDY07437 | Canola | nucleus | 32.97 | 49.64 |
| CDY69959 | Canola | nucleus | 30.76 | 48.87 |
| CDY39299 | Canola | nucleus | 32.33 | 48.46 |
| CDY42891 | Canola | nucleus | 30.44 | 48.25 |
| CDY50867 | Canola | nucleus | 30.44 | 48.25 |
| CDY50448 | Canola | cytosol | 19.4 | 48.24 |
| PGSC0003DMT400061684 | Potato | endoplasmic reticulum, plasma membrane | 55.84 | 48.1 |
| CDY29972 | Canola | nucleus | 30.76 | 47.56 |
| CDY21154 | Canola | nucleus | 30.44 | 47.42 |
| GSMUA_Achr7P01490_001 | Banana | nucleus | 41.64 | 47.14 |
| CDY56132 | Canola | nucleus | 33.12 | 46.98 |
| CDY52966 | Canola | cytosol | 32.97 | 46.65 |
| GSMUA_Achr7P27220_001 | Banana | cytosol | 48.27 | 46.29 |
| CDY51902 | Canola | cytosol | 11.2 | 45.81 |
| GSMUA_Achr4P22630_001 | Banana | nucleus | 44.8 | 45.73 |
| GSMUA_Achr4P21380_001 | Banana | nucleus | 47.16 | 45.44 |
| CDX91541 | Canola | mitochondrion | 11.67 | 45.4 |
| GSMUA_Achr5P02830_001 | Banana | cytosol | 43.69 | 44.97 |
| GSMUA_Achr4P28430_001 | Banana | nucleus, plastid | 43.53 | 44.88 |
| GSMUA_Achr4P14820_001 | Banana | cytosol | 23.34 | 44.71 |
| KXG40139 | Sorghum | plastid | 48.9 | 43.6 |
| EER93461 | Sorghum | nucleus | 45.27 | 43.55 |
| Os03t0748000-01 | Rice | plasma membrane | 45.27 | 43.42 |
| Os03t0158500-01 | Rice | nucleus | 48.27 | 43.28 |
| Zm00001d034005_P003 | Maize | plasma membrane | 44.48 | 42.73 |
| TraesCS5B01G391500.1 | Wheat | nucleus | 44.32 | 42.45 |
| TraesCS5D01G396400.3 | Wheat | nucleus | 43.85 | 41.99 |
| HORVU5Hr1G094950.6 | Barley | cytosol, nucleus | 43.85 | 41.8 |
| TraesCS5A01G386600.2 | Wheat | nucleus | 43.69 | 41.78 |
| TraesCS4D01G273200.4 | Wheat | cytosol | 46.69 | 40.94 |
| TraesCS5A01G431200.1 | Wheat | nucleus | 38.01 | 40.92 |
| TraesCS5D01G439100.1 | Wheat | nucleus | 37.7 | 40.65 |
| TraesCS4A01G031600.2 | Wheat | cytosol | 46.53 | 40.47 |
| TraesCS5B01G433000.1 | Wheat | cytosol | 37.7 | 40.1 |
| HORVU4Hr1G072940.4 | Barley | cytosol | 46.85 | 40.03 |
| Zm00001d048424_P003 | Maize | plastid | 46.53 | 39.86 |
| EER93313 | Sorghum | cytosol | 35.65 | 39.51 |
| KXG34475 | Sorghum | cytosol | 40.22 | 39.47 |
| Os07t0170300-01 | Rice | plasma membrane | 37.07 | 39.04 |
| TraesCS4B01G274500.2 | Wheat | plastid | 46.69 | 38.59 |
| CDY60520 | Canola | cytosol | 7.89 | 37.88 |
| Zm00001d027731_P012 | Maize | plastid | 47.79 | 37.73 |
| Zm00001d007890_P002 | Maize | mitochondrion | 38.17 | 37.06 |
| TraesCS5A01G431100.1 | Wheat | cytosol | 37.38 | 36.92 |
| CDY23562 | Canola | nucleus | 35.8 | 36.61 |
| TraesCS5B01G432900.2 | Wheat | extracellular | 37.38 | 36.57 |
| CDX87395 | Canola | cytosol | 25.55 | 36.49 |
| CDY22270 | Canola | cytosol | 25.71 | 36.38 |
| CDY44025 | Canola | nucleus | 35.65 | 36.33 |
| TraesCS5D01G439200.1 | Wheat | cytosol | 36.75 | 36.29 |
| CDX88524 | Canola | cytosol | 25.24 | 36.2 |
| CDY56809 | Canola | cytosol | 25.55 | 36.16 |
| HORVU5Hr1G104380.1 | Barley | plastid | 37.22 | 35.7 |
| Zm00001d018896_P002 | Maize | mitochondrion | 39.75 | 35.69 |
| CDY43378 | Canola | nucleus | 34.38 | 35.5 |
| CDY24224 | Canola | nucleus | 33.91 | 35.02 |
| HORVU5Hr1G104390.3 | Barley | plastid | 36.59 | 33.72 |
| CDX79309 | Canola | nucleus | 26.18 | 32.61 |
| CDX68000 | Canola | nucleus | 26.18 | 32.61 |
| CDX94944 | Canola | nucleus | 25.55 | 32.6 |
| CDX93476 | Canola | nucleus | 25.39 | 32.2 |
| CDY02802 | Canola | nucleus | 26.66 | 31.65 |
| CDY58572 | Canola | nucleus | 25.08 | 31.36 |
| CDX90116 | Canola | nucleus | 25.71 | 31.29 |
| CDY67303 | Canola | nucleus | 25.71 | 31.29 |
| CDX88661 | Canola | nucleus | 25.08 | 31.18 |
| CDY32718 | Canola | nucleus | 25.71 | 30.81 |
| CDY43306 | Canola | cytosol | 28.86 | 29.85 |
| CDX93645 | Canola | nucleus | 28.23 | 29.25 |
| CDY11758 | Canola | nucleus, plastid | 25.08 | 28.7 |
Protein Annotations
| EnsemblPlants:CDY43989 | EnsemblPlantsGene:GSBRNA2T00079383001 | Gene3D:3.10.590.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR007275 | InterPro:YTH_domain | ncoils:Coil | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF63 |
| PFAM:PF04146 | PFscan:PS50882 | ProteinID:CDY43989 | ProteinID:CDY43989.1 | SEG:seg | UniParc:UPI0004EEC88C |
| UniProt:A0A078I336 | MapMan:16.5.2.1 | : | : | : | : |
Description
BnaA05g25840DBnaA05g25840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I336]
Coordinates
chrLK032576:+:28550..32128
Molecular Weight (calculated)
68973.7 Da
IEP (calculated)
6.210
GRAVY (calculated)
-0.828
Length
634 amino acids
Sequence
(BLAST)
(BLAST)
001: MLQKLSLDPQ AKASEIPEPN KKTAVYQYGG VDSHGQVPTY DRSLTPLLPS DAVDPSVCYV PNAYPQFYYG GYGNGDWSEY TGYQNPEGVD MSSGIYGENG
101: SIVYPQSYGY AAYPYSPATS PGPQVGGDGQ LYGAQQQYQY PAFFPTGAFA SSVATPNQGD LSANKAGGVK TAETKNVASA TGMAKGSNGT VTGKPNNQTT
201: HNTASNLYGT GAPGGGFAGG YGYDGFYAPV PCYDGSKYSD VQRSGSGVAS SYSKSTTVPS SRNQNYRSNS HYTPASMTGY GTGQGYYNRV YQNKVYGSYG
301: SSGRSGMSYG SSGYDSRTNG RGWVSTTDNR YRNWGRGNSS FYGNENNADG LNELNRGPRA KGTKNQKENS EDSLEVKEQN VAEAVETENT CIVPDREQYN
401: KEDFPVDYEN AMFFVIKSYS EDDVHKSIKY NVWASTPNGN KKLAAAYQEA QQKPGGCPIF LFFSVNASGQ FVGLAEMTGP VDFNTNVEYW QQDKWTGSFP
501: LKWHIVKDVP NSLLKHITLE NNENKPVTNS RDTQEVKLEQ GLKIVKIFKE HTSKTCILDD FSFYEVRQKT ILEKKAKQQQ TQKQVSEEKT TTDEKKNSAT
601: ADSANKESPP ATSDVKADEN GSVAKPVSVV ANGC
101: SIVYPQSYGY AAYPYSPATS PGPQVGGDGQ LYGAQQQYQY PAFFPTGAFA SSVATPNQGD LSANKAGGVK TAETKNVASA TGMAKGSNGT VTGKPNNQTT
201: HNTASNLYGT GAPGGGFAGG YGYDGFYAPV PCYDGSKYSD VQRSGSGVAS SYSKSTTVPS SRNQNYRSNS HYTPASMTGY GTGQGYYNRV YQNKVYGSYG
301: SSGRSGMSYG SSGYDSRTNG RGWVSTTDNR YRNWGRGNSS FYGNENNADG LNELNRGPRA KGTKNQKENS EDSLEVKEQN VAEAVETENT CIVPDREQYN
401: KEDFPVDYEN AMFFVIKSYS EDDVHKSIKY NVWASTPNGN KKLAAAYQEA QQKPGGCPIF LFFSVNASGQ FVGLAEMTGP VDFNTNVEYW QQDKWTGSFP
501: LKWHIVKDVP NSLLKHITLE NNENKPVTNS RDTQEVKLEQ GLKIVKIFKE HTSKTCILDD FSFYEVRQKT ILEKKAKQQQ TQKQVSEEKT TTDEKKNSAT
601: ADSANKESPP ATSDVKADEN GSVAKPVSVV ANGC
001: MATVAPPADH LLQKLSLDSP AKASEIPEPN KKTAVYQYGG VDVHGQVPSY DRSLTPMLPS DAADPSVCYV PNPYNPYQYY NVYGSGQEWT DYPAYTNPEG
101: VDMNSGIYGE NGTVVYPQGY GYAAYPYSPA TSPAPQLGGE GQLYGAQQYQ YPNYFPNSGP YASSVATPTQ PDLSANKPAG VKTLPADSNN VASAAGITKG
201: SNGSAPVKPT NQATLNTSSN LYGMGAPGGG LAAGYQDPRY AYEGYYAPVP WHDGSKYSDV QRPVSGSGVA SSYSKSSTVP SSRNQNYRSN SHYTSVHQPS
301: SVTGYGTAQG YYNRMYQNKL YGQYGSTGRS ALGYGSSGYD SRTNGRGWAA TDNKYRSWGR GNSYYYGNEN NVDGLNELNR GPRAKGTKNQ KGNLDDSLEV
401: KEQTGESNVT EVGEADNTCV VPDREQYNKE DFPVDYANAM FFIIKSYSED DVHKSIKYNV WASTPNGNKK LAAAYQEAQQ KAGGCPIFLF FSVNASGQFV
501: GLAEMTGPVD FNTNVEYWQQ DKWTGSFPLK WHIVKDVPNS LLKHITLENN ENKPVTNSRD TQEVKLEQGL KIVKIFKEHS SKTCILDDFS FYEVRQKTIL
601: EKKAKQTQKQ VSEEKVTDEK KESATAESAS KESPAAVQTS SDVKVAENGS VAKPVTGDVV ANGC
101: VDMNSGIYGE NGTVVYPQGY GYAAYPYSPA TSPAPQLGGE GQLYGAQQYQ YPNYFPNSGP YASSVATPTQ PDLSANKPAG VKTLPADSNN VASAAGITKG
201: SNGSAPVKPT NQATLNTSSN LYGMGAPGGG LAAGYQDPRY AYEGYYAPVP WHDGSKYSDV QRPVSGSGVA SSYSKSSTVP SSRNQNYRSN SHYTSVHQPS
301: SVTGYGTAQG YYNRMYQNKL YGQYGSTGRS ALGYGSSGYD SRTNGRGWAA TDNKYRSWGR GNSYYYGNEN NVDGLNELNR GPRAKGTKNQ KGNLDDSLEV
401: KEQTGESNVT EVGEADNTCV VPDREQYNKE DFPVDYANAM FFIIKSYSED DVHKSIKYNV WASTPNGNKK LAAAYQEAQQ KAGGCPIFLF FSVNASGQFV
501: GLAEMTGPVD FNTNVEYWQQ DKWTGSFPLK WHIVKDVPNS LLKHITLENN ENKPVTNSRD TQEVKLEQGL KIVKIFKEHS SKTCILDDFS FYEVRQKTIL
601: EKKAKQTQKQ VSEEKVTDEK KESATAESAS KESPAAVQTS SDVKVAENGS VAKPVTGDVV ANGC
Arabidopsis Description
ECT2ECT2 [Source:UniProtKB/TrEMBL;Acc:A0A178VBC2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.