Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G79270.1 | CDX86664 | AT1G03900.1 | 21798944 |
| AT1G79270.1 | CDX89856 | AT1G03900.1 | 21798944 |
| AT1G79270.1 | CDY15480 | AT1G03900.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003615.1-P | Field mustard | nucleus | 98.43 | 98.43 |
| CDX79309 | Canola | nucleus | 95.87 | 95.87 |
| CDY56809 | Canola | cytosol | 76.82 | 87.28 |
| CDY22270 | Canola | cytosol | 76.82 | 87.28 |
| CDX87395 | Canola | cytosol | 75.64 | 86.71 |
| CDX88524 | Canola | cytosol | 74.85 | 86.2 |
| AT1G79270.1 | Thale cress | nucleus | 84.48 | 81.44 |
| CDY51902 | Canola | cytosol | 14.15 | 46.45 |
| CDY57677 | Canola | mitochondrion | 15.52 | 46.2 |
| KRH43645 | Soybean | nucleus | 49.12 | 43.18 |
| KRH13810 | Soybean | nucleus, plastid | 48.72 | 42.98 |
| VIT_19s0085g01100.t01 | Wine grape | nucleus | 49.51 | 42.64 |
| CDY50448 | Canola | cytosol | 20.43 | 40.78 |
| GSMUA_Achr9P06180_001 | Banana | endoplasmic reticulum, plasma membrane | 44.99 | 37.0 |
| CDX91541 | Canola | mitochondrion | 11.79 | 36.81 |
| GSMUA_Achr6P26690_001 | Banana | cytosol | 43.03 | 35.96 |
| CDY07437 | Canola | nucleus | 28.09 | 33.97 |
| CDY50867 | Canola | nucleus | 26.52 | 33.75 |
| CDY42891 | Canola | nucleus | 26.52 | 33.75 |
| Os01t0679900-01 | Rice | nucleus | 40.27 | 33.66 |
| CDY69959 | Canola | nucleus | 26.33 | 33.58 |
| CDY39299 | Canola | nucleus | 27.5 | 33.1 |
| Zm00001d011602_P001 | Maize | nucleus | 39.49 | 33.0 |
| CDY29972 | Canola | nucleus | 25.93 | 32.2 |
| CDY52966 | Canola | cytosol | 28.29 | 32.14 |
| CDY56132 | Canola | nucleus | 28.09 | 31.99 |
| CDY05744 | Canola | cytosol | 7.86 | 31.75 |
| CDY21154 | Canola | nucleus | 25.34 | 31.7 |
| CDY24182 | Canola | nucleus | 33.01 | 31.05 |
| TraesCS3B01G301100.1 | Wheat | nucleus | 41.65 | 30.81 |
| TraesCS3D01G267900.1 | Wheat | nucleus | 41.26 | 30.52 |
| TraesCS3A01G267700.1 | Wheat | nucleus | 40.86 | 30.1 |
| OQU87332 | Sorghum | mitochondrion, nucleus | 39.49 | 29.96 |
| Zm00001d043860_P001 | Maize | mitochondrion | 38.7 | 29.19 |
| CDY58572 | Canola | nucleus | 28.29 | 28.4 |
| CDX88661 | Canola | nucleus | 28.09 | 28.04 |
| CDX94944 | Canola | nucleus | 27.11 | 27.77 |
| CDY02802 | Canola | nucleus | 28.88 | 27.53 |
| CDX93476 | Canola | nucleus | 26.92 | 27.4 |
| CDY07089 | Canola | nucleus | 33.79 | 27.04 |
| CDY32718 | Canola | nucleus | 28.09 | 27.03 |
| CDY43306 | Canola | cytosol | 32.42 | 26.92 |
| CDY23562 | Canola | nucleus | 32.61 | 26.77 |
| CDY23602 | Canola | nucleus | 32.81 | 26.76 |
| CDY24224 | Canola | nucleus | 32.22 | 26.71 |
| CDY43378 | Canola | nucleus | 32.02 | 26.55 |
| CDY44025 | Canola | nucleus | 32.42 | 26.53 |
| HORVU3Hr1G062620.8 | Barley | mitochondrion | 40.08 | 26.32 |
| CDY43989 | Canola | nucleus | 32.61 | 26.18 |
| CDX93645 | Canola | nucleus | 31.24 | 25.98 |
| CDX82538 | Canola | nucleus | 32.61 | 25.94 |
| CDY67303 | Canola | nucleus | 26.52 | 25.91 |
| CDX90116 | Canola | nucleus | 26.52 | 25.91 |
| CDX75712 | Canola | nucleus | 31.83 | 25.55 |
| CDY11758 | Canola | nucleus, plastid | 25.93 | 23.83 |
| CDY60520 | Canola | cytosol | 5.5 | 21.21 |
Protein Annotations
| EnsemblPlants:CDX68000 | EnsemblPlantsGene:GSBRNA2T00099217001 | Gene3D:3.10.590.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR007275 | InterPro:YTH_domain | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF56 | PFAM:PF04146 |
| PFscan:PS50882 | ProteinID:CDX68000 | ProteinID:CDX68000.1 | SEG:seg | UniParc:UPI0004EED1F1 | MapMan:16.5.2.1 |
Description
BnaA07g20400D
Coordinates
chrLK031787:-:3281521..3284424
Molecular Weight (calculated)
57457.8 Da
IEP (calculated)
5.902
GRAVY (calculated)
-0.839
Length
509 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSHVPKHPR EPTEDMVKNL KVDPLAKVAA STTSMKNQSE PYYETLETYQ GLPCPYGGYY GFYYPGLDGS LGEAKDNGYY GYGTDVQYPV MQGENGSLIY
101: MMPGFQSYDV SPTYMPISPA GVSSQALHSP MYAAQGYYQN QYGYGDLSSP TYLWDPVGEN YVYGVASNNQ SMKQNISSSS SHNYSNYYSK SKTSFTGHGM
201: GGRPRTPQKS SYAPLPPHNQ ERGGPLKKKY GASNRDETEK LKARNKENGS SVSENVQEDG ECESCLLDGE GKGRSNGVGY VIKRDQYNLP SFQTKYEEAM
301: FFVIKSYSED DIHKSIKYNV WSSTLNGNKK LDSAYQESQK KVAEKGGTCP VFLFFSVNAS GQFCGVAEMT GRVDYEKSME FWQQDKWTGY FPVKWHIIKD
401: VPNPQLRHVI LENNENKPVT NSRDTQEVRL PQGNEVLNIF KNYAAKTSIL DDFDFYENRE RVMVQKKLRF NPVSKKQEED LVADMQTMEI SDTVKEENTD
501: ITGTLDSLK
101: MMPGFQSYDV SPTYMPISPA GVSSQALHSP MYAAQGYYQN QYGYGDLSSP TYLWDPVGEN YVYGVASNNQ SMKQNISSSS SHNYSNYYSK SKTSFTGHGM
201: GGRPRTPQKS SYAPLPPHNQ ERGGPLKKKY GASNRDETEK LKARNKENGS SVSENVQEDG ECESCLLDGE GKGRSNGVGY VIKRDQYNLP SFQTKYEEAM
301: FFVIKSYSED DIHKSIKYNV WSSTLNGNKK LDSAYQESQK KVAEKGGTCP VFLFFSVNAS GQFCGVAEMT GRVDYEKSME FWQQDKWTGY FPVKWHIIKD
401: VPNPQLRHVI LENNENKPVT NSRDTQEVRL PQGNEVLNIF KNYAAKTSIL DDFDFYENRE RVMVQKKLRF NPVSKKQEED LVADMQTMEI SDTVKEENTD
501: ITGTLDSLK
001: MTSHVPKHPR KSFEDMVKNL KVDPLAKVTA STTSMVSAKE NKNQSEAEPS YYETLETYQG LPCPYGGYYG YYYPGLDGSV GEAKDNGYYG YGTEVQYPVM
101: QGENGSVIYL MPGFQSYDAS QTYMPINPVG VSSQALHSPM YAAQGYYQNQ FGYADVSSPT YLWDPVGDRY VYGVASYTPP LKQNISSSSH NHNNYYSKSK
201: NSFTGHGMGD RPKTPRKASQ NSYAPPPLLN QEKGRIAYPM DPVKKKSGAL NRDETEKAKA RTKENGTSMN DLANGQDHIT NGECESCSLD AEGNERSNGV
301: GSVIRRDQYN LPSFQTKYEE AIFFVIKSYS EDDIHKSIKY NVWSSTLNGN KKLDSAYQES QKKAADKSGK CPVFLFFSVN ASGQFCGVAE MIGRVDYEKS
401: MEFWQQDKWT GYFPVKWHII KDVPNPQLRH IILENNENKP VTNSRDTQEV RLPQGNEVLN IFKNYAAKTS ILDDFDFYEN REKVMVQKKL RFPPVLKKKE
501: EDLVADFKTM EMSNTVEEGN TELTGTVS
101: QGENGSVIYL MPGFQSYDAS QTYMPINPVG VSSQALHSPM YAAQGYYQNQ FGYADVSSPT YLWDPVGDRY VYGVASYTPP LKQNISSSSH NHNNYYSKSK
201: NSFTGHGMGD RPKTPRKASQ NSYAPPPLLN QEKGRIAYPM DPVKKKSGAL NRDETEKAKA RTKENGTSMN DLANGQDHIT NGECESCSLD AEGNERSNGV
301: GSVIRRDQYN LPSFQTKYEE AIFFVIKSYS EDDIHKSIKY NVWSSTLNGN KKLDSAYQES QKKAADKSGK CPVFLFFSVN ASGQFCGVAE MIGRVDYEKS
401: MEFWQQDKWT GYFPVKWHII KDVPNPQLRH IILENNENKP VTNSRDTQEV RLPQGNEVLN IFKNYAAKTS ILDDFDFYEN REKVMVQKKL RFPPVLKKKE
501: EDLVADFKTM EMSNTVEEGN TELTGTVS
Arabidopsis Description
ECT8Evolutionarily conserved C-terminal region 8 [Source:UniProtKB/TrEMBL;Acc:Q9FPE7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.