Factsheet for TraesCS3A01G267700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G153300.1
TraesCS1B01G171600.1
TraesCS1D01G151800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79270.1	TraesCS1A01G153300.1	AT1G03900.1	21798944
AT1G79270.1	TraesCS1B01G171600.1	AT1G03900.1	21798944
AT1G79270.1	TraesCS1D01G151800.1	AT1G03900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G267900.1	Wheat	nucleus	90.88	91.28
TraesCS3B01G301100.1	Wheat	nucleus	90.45	90.84
HORVU3Hr1G062620.8	Barley	mitochondrion	86.54	77.16
Os01t0679900-01	Rice	nucleus	64.54	73.23
Zm00001d011602_P001	Maize	nucleus	62.66	71.1
OQU87332	Sorghum	mitochondrion, nucleus	64.69	66.62
Zm00001d043860_P001	Maize	mitochondrion	62.66	64.15
Bra035104.1-P	Field mustard	cytosol	28.65	44.7
CDX88524	Canola	cytosol	28.51	44.57
CDX87395	Canola	cytosol	28.51	44.37
GSMUA_Achr9P06180_001	Banana	endoplasmic reticulum, plasma membrane	39.65	44.26
VIT_19s0085g01100.t01	Wine grape	nucleus	37.48	43.82
CDY22270	Canola	cytosol	28.36	43.75
CDY56809	Canola	cytosol	28.36	43.75
Bra008406.1-P	Field mustard	cytosol	28.36	43.75
GSMUA_Achr6P26690_001	Banana	cytosol	38.06	43.19
KRH43645	Soybean	nucleus	35.75	42.66
KRH13810	Soybean	nucleus, plastid	35.17	42.11
CDX68000	Canola	nucleus	30.1	40.86
Bra003615.1-P	Field mustard	nucleus	30.1	40.86
CDX79309	Canola	nucleus	29.67	40.27
AT1G79270.1	Thale cress	nucleus	30.54	39.96
TraesCS1A01G044500.1	Wheat	nucleus	28.36	30.53
TraesCS7A01G276800.3	Wheat	nucleus	26.63	29.44
TraesCS5A01G386600.2	Wheat	nucleus	28.08	29.26
TraesCS5A01G431200.1	Wheat	nucleus	24.75	29.03
TraesCS7A01G291700.1	Wheat	cytosol	24.02	28.14
TraesCS5A01G431100.1	Wheat	cytosol	25.47	27.41
TraesCS4A01G031600.2	Wheat	cytosol	28.51	27.02
TraesCS4A01G125600.3	Wheat	cytosol, nucleus, plastid	26.77	25.73
TraesCS2A01G011400.1	Wheat	nucleus	25.47	24.75
TraesCS3A01G199100.2	Wheat	cytosol	22.72	22.79
TraesCS1A01G105700.1	Wheat	cytosol	19.97	19.66

Protein Annotations

EnsemblPlants:TraesCS3A01G267700.1	EnsemblPlantsGene:TraesCS3A01G267700	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF58
PFAM:PF04146	PFscan:PS50882	SEG:seg	MapMan:16.5.2.1	:	:

Description

No Description!

Coordinates

chr3A:-:493128049..493133630

Molecular Weight (calculated)

75296.5 Da

IEP (calculated)

5.333

GRAVY (calculated)

-0.727

Length

691 amino acids

Sequence
(BLAST)

001: MEPKPNTALA RKPIEEAVDN LTIDASTKAS NGNLPAAKDV SSSDAISCIS SADAASTAAK DAEMNQVTYM GDQGMCYYGY YYPGSFGGWD ENSYYAGSNG
101: LEMQPTVVQA ENGSYLCYVP GYENGYTAYS PVVPGNGVDG QYVSKEPYYS AVVPVQDPST PGMYAQPIAY GPELVPAYTW DPYVLLDGVQ GHPVGVHQTN
201: YPTRSNYPSN KHAVPSSKAS RSTKYASGTT KGSSSAVDTV PTSANNHPSS KFANKVSGAS ITKGHLPSSK FVAHTNQGKG SFYQSKGINL NESGRNCNGN
301: EKLKARSKLN EFGDRDVSDK PNDDSKNSLS PGADRFGLSG VQEVNDDIPS LVAVRRDSYN LPDFVTKYEQ ALFFVIKSYS EDDIHKSIKY NVWASTPNGN
401: KRLDNAYKIA QERMAGKGTK CPVFLFFSVN ASGQFCGVAE MLGPVDFNKS MNFWQQDKWN GFFPVKWHII KDVPNPQFRH IILENNENKP VTNSRDTQEV
501: KFLQGAEMLN IFKNFSCKTS ILDDFDFYEN RQKVMQDRRG KPLTTSLDHL TPKDEKPSES EKQAQSACNV EHHNAKRNEE QSNDVTTDVD TAKTSQKQIN
601: VDPADVDTAK TGQKQSNVDA ADLDTTKTSE QSKVVAADVD TAKTSEGSNG VAADLDASNR SEEQSNKVTA AMLDDTGKRS EEQTSSVAAA G

Best Arabidopsis Sequence Match ( AT1G79270.1 )
(BLAST)

001: MTSHVPKHPR KSFEDMVKNL KVDPLAKVTA STTSMVSAKE NKNQSEAEPS YYETLETYQG LPCPYGGYYG YYYPGLDGSV GEAKDNGYYG YGTEVQYPVM
101: QGENGSVIYL MPGFQSYDAS QTYMPINPVG VSSQALHSPM YAAQGYYQNQ FGYADVSSPT YLWDPVGDRY VYGVASYTPP LKQNISSSSH NHNNYYSKSK
201: NSFTGHGMGD RPKTPRKASQ NSYAPPPLLN QEKGRIAYPM DPVKKKSGAL NRDETEKAKA RTKENGTSMN DLANGQDHIT NGECESCSLD AEGNERSNGV
301: GSVIRRDQYN LPSFQTKYEE AIFFVIKSYS EDDIHKSIKY NVWSSTLNGN KKLDSAYQES QKKAADKSGK CPVFLFFSVN ASGQFCGVAE MIGRVDYEKS
401: MEFWQQDKWT GYFPVKWHII KDVPNPQLRH IILENNENKP VTNSRDTQEV RLPQGNEVLN IFKNYAAKTS ILDDFDFYEN REKVMVQKKL RFPPVLKKKE
501: EDLVADFKTM EMSNTVEEGN TELTGTVS

Arabidopsis Description

ECT8Evolutionarily conserved C-terminal region 8 [Source:UniProtKB/TrEMBL;Acc:Q9FPE7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.