Factsheet for Zm00001d011602_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d014039_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79270.1	Zm00001d014039_P001	AT1G03900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU87332	Sorghum	mitochondrion, nucleus	87.03	78.99
Zm00001d043860_P001	Maize	mitochondrion	86.37	77.93
Os01t0679900-01	Rice	nucleus	71.92	71.92
Zm00001d002008_P001	Maize	cytosol	8.54	71.23
TraesCS3B01G301100.1	Wheat	nucleus	72.09	63.81
TraesCS3D01G267900.1	Wheat	nucleus	71.26	63.08
TraesCS3A01G267700.1	Wheat	nucleus	71.1	62.66
HORVU3Hr1G062620.8	Barley	mitochondrion	69.95	54.97
Bra008406.1-P	Field mustard	cytosol	31.69	43.08
CDY56809	Canola	cytosol	31.53	42.86
GSMUA_Achr9P06180_001	Banana	endoplasmic reticulum, plasma membrane	43.35	42.65
CDY22270	Canola	cytosol	31.36	42.63
KRH43645	Soybean	nucleus	40.39	42.49
Bra035104.1-P	Field mustard	cytosol	30.71	42.21
GSMUA_Achr6P26690_001	Banana	cytosol	41.87	41.87
CDX88524	Canola	cytosol	30.38	41.86
CDX87395	Canola	cytosol	30.38	41.67
VIT_19s0085g01100.t01	Wine grape	nucleus	40.39	41.62
KRH13810	Soybean	nucleus, plastid	39.24	41.42
Bra003615.1-P	Field mustard	nucleus	33.0	39.49
CDX68000	Canola	nucleus	33.0	39.49
CDX79309	Canola	nucleus	32.68	39.1
AT1G79270.1	Thale cress	nucleus	33.66	38.83
Zm00001d008913_P001	Maize	cytosol, nucleus, peroxisome	19.54	29.82
Zm00001d034005_P003	Maize	plasma membrane	31.69	29.24
Zm00001d049360_P004	Maize	extracellular	27.91	28.52
Zm00001d024339_P001	Maize	extracellular	27.26	28.04
Zm00001d031981_P002	Maize	cytosol	29.89	27.96
Zm00001d002372_P002	Maize	nucleus	24.47	26.99
Zm00001d007890_P002	Maize	mitochondrion	27.75	25.88
Zm00001d048424_P003	Maize	plastid	31.36	25.81
Zm00001d047072_P001	Maize	mitochondrion	20.03	24.95
Zm00001d018896_P002	Maize	mitochondrion	28.57	24.65
Zm00001d027731_P012	Maize	plastid	31.2	23.66
Zm00001d010826_P001	Maize	cytosol	14.94	21.98
Zm00001d038120_P001	Maize	cytosol	8.37	21.89
Zm00001d032562_P001	Maize	cytosol	9.52	20.94
Zm00001d034996_P005	Maize	cytosol	22.66	20.06
Zm00001d048501_P002	Maize	cytosol	24.3	19.53
Zm00001d049729_P008	Maize	cytosol	22.66	19.17
Zm00001d051781_P001	Maize	cytosol, extracellular	7.72	18.73

Protein Annotations

EnsemblPlants:Zm00001d011602_P001	EnsemblPlants:Zm00001d011602_T001	EnsemblPlantsGene:Zm00001d011602	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF58
PFAM:PF04146	PFscan:PS50882	ProteinID:AQK97393.1	SEG:seg	UniParc:UPI000189D6A0	UniProt:K7VKN2
MapMan:16.5.2.1	:	:	:	:	:

Description

evolutionarily conserved C-terminal region 8

Coordinates

chr8:+:155605254..155612368

Molecular Weight (calculated)

66759.4 Da

IEP (calculated)

7.427

GRAVY (calculated)

-0.639

Length

609 amino acids

Sequence
(BLAST)

001: MEPKGESGQK PIEEAIDSLK TDASMKANNV NLPAKKDASS SDAVSCISSG DAASTVKDRE MNQETSFGDQ GMHYYGYYYP GAYGGWDENG YFVGYNGLEV
101: HPAVVQADNG SYLCYPLGYE NGYASYIPVV PGGIASVDGQ YVSKEPYYSS ALPIQDPSTP GIFAQPIAYG TELVPAYSWD PFVLLDGVQG HPVGVHHTNY
201: APRPKYSSNK HVVPSLKASH SAKSTADTVK GSSSALETVP NAANSSTSSK GANKAPGASI TKGYLPSSKF VMHSNNQAKS SVYQSKGINL KESGRSWHSS
301: EKLKARSKLN GHGDSESNEN NHTDNSKYSL SSQSDVVGLS SVGDANASIP SPVVIRKTAY NLSDFVTKYE QALFFVIKSY SEDDIHKSIK YNVWASTPNG
401: NKRLDNAYRL AQERMAEKGT KCPVFLFFSV NASGQFCGVA EMVGPVDFNR NMNFWQQDKW NGFFSVKWHI IKDVPNPQFR HIILENNENK PVTNSRDTQE
501: VKFSQGTEML NIFKNFTCKA SILDDFDFYE NRQKVMQDRR GKPLTSFGHP LPKAEKTAEV KRQTQLISAT EVGRADTTKE NEEKSSSVPE ILNAACSNKE
601: KPNKIATDG

Best Arabidopsis Sequence Match ( AT1G79270.3 )
(BLAST)

001: MVKNLKVDPL AKVTASTTSM VSAKENKNQS EAEPSYYETL ETYQGLPCPY GGYYGYYYPG LDGSVGEAKD NGYYGYGTEV QYPVMQGENG SVIYLMPGFQ
101: SYDASQTYMP INPVGVSSQA LHSPMYAAQG YYQNQFGYAD VSSPTYLWDP VGDRYVYGVA SYTPPLKQNI SSSSHNHNNY YSKSKNSFTG HGMGDRPKTP
201: RKASQNSYAP PPLLNQEKGR IAYPMDPVKK KSGALNRDET EKAKARTKEN GTSMNDLANG QDHITNGECE SCSLDAEGNE RSNGVGSVIR RDQYNLPSFQ
301: TKYEEAIFFV IKSYSEDDIH KSIKYNVWSS TLNGNKKLDS AYQESQKKAA DKSGKCPVFL FFSVNASGQF CGVAEMIGRV DYEKSMEFWQ QDKWTGYFPV
401: KWHIIKDVPN PQLRHIILEN NENKPVTNSR DTQEVRLPQG NEVLNIFKNY AAKTSILDDF DFYENREKVM VQKKLRFPPV LKKKEEDLVA DFKTMEMSNT
501: VEEGNTELTG TVS

Arabidopsis Description

ECT8Evolutionarily conserved C-terminal region 8 [Source:UniProtKB/TrEMBL;Acc:Q9FPE7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.