CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 1
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH19576
KRH32201

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79270.1	KRH19576	AT1G03900.1	21798944
AT1G79270.1	KRH32201	AT1G03900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13810	Soybean	nucleus, plastid	94.47	94.8
VIT_19s0085g01100.t01	Wine grape	nucleus	57.86	56.68
KRH26322	Soybean	cytosol	11.92	53.91
Bra035104.1-P	Field mustard	cytosol	40.59	53.05
CDX87395	Canola	cytosol	40.24	52.48
Bra008406.1-P	Field mustard	cytosol	40.41	52.23
CDX88524	Canola	cytosol	39.72	52.04
CDY56809	Canola	cytosol	40.24	52.01
CDY22270	Canola	cytosol	39.72	51.34
CDX68000	Canola	nucleus	43.18	49.12
Bra003615.1-P	Field mustard	nucleus	42.83	48.72
CDX79309	Canola	nucleus	42.49	48.33
AT1G79270.1	Thale cress	nucleus	43.35	47.54
GSMUA_Achr6P26690_001	Banana	cytosol	49.57	47.13
GSMUA_Achr9P06180_001	Banana	endoplasmic reticulum, plasma membrane	49.4	46.2
Os01t0679900-01	Rice	nucleus	42.66	40.56
Zm00001d011602_P001	Maize	nucleus	42.49	40.39
KRH36908	Soybean	cytosol	29.71	38.74
OQU87332	Sorghum	mitochondrion, nucleus	42.31	36.51
Zm00001d043860_P001	Maize	mitochondrion	42.14	36.15
TraesCS3B01G301100.1	Wheat	nucleus	42.49	35.76
TraesCS3A01G267700.1	Wheat	nucleus	42.66	35.75
TraesCS3D01G267900.1	Wheat	nucleus	42.31	35.61
HORVU3Hr1G062620.8	Barley	mitochondrion	41.28	30.84
KRH44697	Soybean	mitochondrion	33.33	29.33
KRH46969	Soybean	endoplasmic reticulum, extracellular	32.64	29.21
KRH59123	Soybean	nucleus	34.54	28.25
KRH43005	Soybean	nucleus	34.37	28.15
KRH06073	Soybean	cytosol, nucleus, peroxisome	24.01	28.02
KRH02430	Soybean	cytosol	32.64	27.23
KRH50636	Soybean	cytosol	32.47	27.05
KRH06717	Soybean	nucleus	30.74	26.85
KRG94807	Soybean	nucleus	30.05	26.4
KRH70155	Soybean	nucleus	28.5	26.19
KRH11876	Soybean	endoplasmic reticulum	30.92	25.54

Protein Annotations

EMBL:ACUP02004873	EnsemblPlants:KRH43645	EnsemblPlantsGene:GLYMA_08G162200	EntrezGene:100791190	Gene3D:3.10.590.10	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357
PANTHER:PTHR12357:SF55	PFAM:PF04146	PFscan:PS50882	ProteinID:KRH43645	ProteinID:KRH43645.1	SEG:seg
UniParc:UPI000189D6CD	UniProt:A0A0R4J3X2	MapMan:16.5.2.1	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:12634560..12639738

Molecular Weight (calculated)

63785.0 Da

IEP (calculated)

7.073

GRAVY (calculated)

-0.701

Length

579 amino acids

Sequence
(BLAST)

001: MAAQLQKSAD EMRKKLHGDS STVELNNSNS VPSKGASSPS DARSCVSSIG DASGSVKEVD VDHEYLSTDQ GVPYPAGGYY GYYYPGYGGF YGESDNQGYY
101: VGADAVDLQY PVMQADNGSY VYLVPGFQTG YPSYYHPLSP AGIEGQYVGH NVYPPGSIYQ QPIGSPGYYP ASLSYGELQP TTYSWDSPLI NQDGLQGHGY
201: NELAGKPNGR SNLSSQSHTS GVVSKSAPPP NSAEGKGLTS LLEVSSTHVK HNQPKQTNKA PVSVLHSPVA KFPAYNQGKS GFLYPNNLLN VKANTKGWVS
301: TEKLKQRNKV NDSLNEQNQG PRTANAKGAL MSGGNSVRGS APGGSGNVTN KIRTDQYNLP DFPTKYDHAL FFVIKSYSED DIHKSIKYNV WASTPNGNKR
401: LDGAFQDAQK RMEEKGCKCP VFLFFSVNAS GQFCGVAEMT GRVDFNKSMD FWQQDKWNGY FSVKWHIIKD VPNPQLRHII LENNDHKPVT NSRDTQEVSF
501: PQGVEMLNIF KNYVARTSIL DDFEFYESRQ KVLQEKKTRQ SMPHTSVQQI EELTTTLGSV DLSSVKNMED PKVVERVND

Best Arabidopsis Sequence Match ( AT1G79270.1 )
(BLAST)

001: MTSHVPKHPR KSFEDMVKNL KVDPLAKVTA STTSMVSAKE NKNQSEAEPS YYETLETYQG LPCPYGGYYG YYYPGLDGSV GEAKDNGYYG YGTEVQYPVM
101: QGENGSVIYL MPGFQSYDAS QTYMPINPVG VSSQALHSPM YAAQGYYQNQ FGYADVSSPT YLWDPVGDRY VYGVASYTPP LKQNISSSSH NHNNYYSKSK
201: NSFTGHGMGD RPKTPRKASQ NSYAPPPLLN QEKGRIAYPM DPVKKKSGAL NRDETEKAKA RTKENGTSMN DLANGQDHIT NGECESCSLD AEGNERSNGV
301: GSVIRRDQYN LPSFQTKYEE AIFFVIKSYS EDDIHKSIKY NVWSSTLNGN KKLDSAYQES QKKAADKSGK CPVFLFFSVN ASGQFCGVAE MIGRVDYEKS
401: MEFWQQDKWT GYFPVKWHII KDVPNPQLRH IILENNENKP VTNSRDTQEV RLPQGNEVLN IFKNYAAKTS ILDDFDFYEN REKVMVQKKL RFPPVLKKKE
501: EDLVADFKTM EMSNTVEEGN TELTGTVS

Arabidopsis Description

ECT8Evolutionarily conserved C-terminal region 8 [Source:UniProtKB/TrEMBL;Acc:Q9FPE7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.