CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plasma membrane 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02470
KRH12685
KRH19498
KRH37641

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13460.1	KRH02470	AT3G17510.1	16113215
AT3G13460.1	KRH12685	AT3G17510.1	16113215
AT3G13460.1	KRH19498	AT3G17510.1	16113215
AT3G13460.1	KRH37641	AT3G17510.1	16113215

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43005	Soybean	nucleus	96.33	96.46
VIT_06s0004g00200.t01	Wine grape	nucleus	72.6	72.91
Solyc01g028860.2.1	Tomato	nucleus	61.02	61.19
AT1G55500.5	Thale cress	cytosol	51.41	60.17
CDX82538	Canola	nucleus	53.67	59.38
PGSC0003DMT400061684	Potato	endoplasmic reticulum, plasma membrane	61.44	59.1
Bra001506.1-P	Field mustard	nucleus	53.25	59.0
AT3G13460.1	Thale cress	cytosol	55.23	58.62
Bra027432.1-P	Field mustard	nucleus	52.4	58.52
GSMUA_Achr7P01490_001	Banana	nucleus	46.19	58.39
CDY43989	Canola	nucleus	52.12	58.2
CDX75712	Canola	nucleus	52.12	58.2
CDY23602	Canola	nucleus	51.13	58.01
GSMUA_Achr4P21380_001	Banana	nucleus	53.81	57.9
Bra039400.1-P	Field mustard	nucleus	51.69	57.55
CDY24182	Canola	nucleus	43.93	57.49
CDY07089	Canola	nucleus	51.55	57.39
GSMUA_Achr4P22630_001	Banana	nucleus	49.29	56.2
GSMUA_Achr5P02830_001	Banana	cytosol	48.73	56.01
GSMUA_Achr7P27220_001	Banana	cytosol	51.69	55.37
EER93461	Sorghum	nucleus	50.85	54.63
Zm00001d034005_P003	Maize	plasma membrane	50.14	53.79
Os03t0748000-01	Rice	plasma membrane	49.86	53.4
GSMUA_Achr4P28430_001	Banana	nucleus, plastid	46.33	53.33
TraesCS5B01G391500.1	Wheat	nucleus	48.59	51.96
TraesCS5D01G396400.3	Wheat	nucleus	48.45	51.81
TraesCS5A01G386600.2	Wheat	nucleus	48.45	51.73
HORVU5Hr1G094950.6	Barley	cytosol, nucleus	48.31	51.43
KRH26322	Soybean	cytosol	9.18	50.78
GSMUA_Achr4P14820_001	Banana	cytosol	23.02	49.24
KXG40139	Sorghum	plastid	49.29	49.09
Os03t0158500-01	Rice	nucleus	48.87	48.94
TraesCS4D01G273200.4	Wheat	cytosol	49.29	48.27
TraesCS4A01G031600.2	Wheat	cytosol	49.29	47.87
HORVU4Hr1G072940.4	Barley	cytosol	49.72	47.44
TraesCS4B01G274500.2	Wheat	plastid	51.13	47.2
KRG94807	Soybean	nucleus	42.09	45.22
KRH06717	Soybean	nucleus	41.67	44.49
Zm00001d048424_P003	Maize	plastid	46.33	44.32
EER93313	Sorghum	cytosol	35.59	44.06
KRH70155	Soybean	nucleus	38.84	43.65
TraesCS5A01G431200.1	Wheat	nucleus	35.88	43.12
TraesCS5B01G433000.1	Wheat	cytosol	36.3	43.12
Os07t0170300-01	Rice	plasma membrane	36.44	42.86
TraesCS5D01G439100.1	Wheat	nucleus	35.59	42.86
Zm00001d027731_P012	Maize	plastid	47.32	41.72
KXG34475	Sorghum	cytosol	37.71	41.33
KRH36908	Soybean	cytosol	25.85	41.22
TraesCS5A01G431100.1	Wheat	cytosol	37.29	41.12
TraesCS5D01G439200.1	Wheat	cytosol	36.72	40.5
TraesCS5B01G432900.2	Wheat	extracellular	36.58	39.97
HORVU5Hr1G104380.1	Barley	plastid	36.3	38.88
Zm00001d007890_P002	Maize	mitochondrion	35.45	38.44
Zm00001d018896_P002	Maize	mitochondrion	37.01	37.11
KRH46969	Soybean	endoplasmic reticulum, extracellular	33.62	36.79
HORVU5Hr1G104390.3	Barley	plastid	35.31	36.34
KRH44697	Soybean	mitochondrion	33.47	36.02
KRH43645	Soybean	nucleus	28.25	34.54
KRH13810	Soybean	nucleus, plastid	27.97	34.32
KRH02430	Soybean	cytosol	31.36	31.99
KRH50636	Soybean	cytosol	31.07	31.65
KRH11876	Soybean	endoplasmic reticulum	28.53	28.82
KRH06073	Soybean	cytosol, nucleus, peroxisome	19.49	27.82

Protein Annotations

EMBL:ACUP02003299	EnsemblPlants:KRH59123	EnsemblPlantsGene:GLYMA_05G166600	EntrezGene:100807919	Gene3D:3.10.590.10	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357
PANTHER:PTHR12357:SF63	PFAM:PF04146	PFscan:PS50882	ProteinID:KRH59123	ProteinID:KRH59123.1	SEG:seg
UniParc:UPI00023C4C52	UniProt:I1K478	MapMan:16.5.2.1	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:35713435..35716761

Molecular Weight (calculated)

77179.5 Da

IEP (calculated)

6.598

GRAVY (calculated)

-0.732

Length

708 amino acids

Sequence
(BLAST)

001: MATVANPADQ ATDLLQKLSL ETQPKPLEIP EPTKKATGNQ YGSVDSGNAA NGQIQSYDRS VTPVLQDFID PTMCYLPNGY PSTAYYYGGY DGTGNEWDEY
101: SRYVNSEGVE MTSGVYGDNG SLLYHHGYGY APYGPYSPAG SPVPTMGNDG QLYGPQHYQY PPYFQPLTPT SAPFTPTPAV LPQGEVSTSV AADQKPLPVD
201: AANGNSNGVA NGGNAKGNNA AASIKQANQN SSFSSKASNE RVTMPGRGPT SGYQDPRFGF DGVRSPIPWL DAPLFSDGQP RPVSSTTITS SISGGNNTAS
301: RNPTFRPNSQ FMGLHHPRPM PAMGATHSFI NRMYPSKLYG QYGNTVRSGM GYGTHGYDSR TNGRAWLAVD SKYKTRGRSG GYFGYGNENA DGLNELNRGP
401: RAKGGKNQKG FAPTILAVKG QTLPATLGTD EEKDKTSTIL ECDQYNKADF PEEYTDAKFF VIKSYSEDDI HKSIKYNVWA STQNGNKKLD AAYQEAQQKP
501: GGTPVFLFFS VNTSGQFVGL AEMIGPVDFN KSVEYWQQDK WNGCFPLKWH IVKDVPNNLL RHITLDNNEN KPVTNSRDTQ EVMLEPGLKL IKIFKEYTSK
601: TCILDDFGFY EARQKTILEK KAKQQFPKQV WEGKPADEKI EINGEVNTQK SEVSSELLKE STLAEKDSDD HKVPENGSAT KTGDAPKGAK PVVPESKIVA
701: NGVVSNGV

Best Arabidopsis Sequence Match ( AT3G13460.1 )
(BLAST)

001: MATVAPPADQ ATDLLQKLSL DSPAKASEIP EPNKKTAVYQ YGGVDVHGQV PSYDRSLTPM LPSDAADPSV CYVPNPYNPY QYYNVYGSGQ EWTDYPAYTN
101: PEGVDMNSGI YGENGTVVYP QGYGYAAYPY SPATSPAPQL GGEGQLYGAQ QYQYPNYFPN SGPYASSVAT PTQPDLSANK PAGVKTLPAD SNNVASAAGI
201: TKGSNGSAPV KPTNQATLNT SSNLYGMGAP GGGLAAGYQD PRYAYEGYYA PVPWHDGSKY SDVQRPVSGS GVASSYSKSS TVPSSRNQNY RSNSHYTSVH
301: QPSSVTGYGT AQGYYNRMYQ NKLYGQYGST GRSALGYGSS GYDSRTNGRG WAATDNKYRS WGRGNSYYYG NENNVDGLNE LNRGPRAKGT KNQKGNLDDS
401: LEVKEQTGES NVTEVGEADN TCVVPDREQY NKEDFPVDYA NAMFFIIKSY SEDDVHKSIK YNVWASTPNG NKKLAAAYQE AQQKAGGCPI FLFFSVNASG
501: QFVGLAEMTG PVDFNTNVEY WQQDKWTGSF PLKWHIVKDV PNSLLKHITL ENNENKPVTN SRDTQEVKLE QGLKIVKIFK EHSSKTCILD DFSFYEVRQK
601: TILEKKAKQT QKQVSEEKVT DEKKESATAE SASKESPAAV QTSSDVKVAE NGSVAKPVTG DVVANGC

Arabidopsis Description

ECT2ECT2 [Source:UniProtKB/TrEMBL;Acc:A0A178VBC2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.