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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 4
  • plasma membrane 1
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:nucleus
EpiLoc:plasma membrane
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
 plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0292200-01
Os05t0136200-01
Os07t0637000-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G13460.1 Os01t0292200-01 AT3G17510.1 16113215
AT3G13460.1 Os05t0136200-01 AT3G17510.1 16113215
AT3G13460.1 Os07t0637000-01 AT3G17510.1 16113215
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EER93461 Sorghum nucleus 80.18 80.42
Zm00001d034005_P003 Maize plasma membrane 78.06 78.18
TraesCS5D01G396400.3 Wheat nucleus 77.61 77.49
TraesCS5B01G391500.1 Wheat nucleus 77.61 77.49
TraesCS5A01G386600.2 Wheat nucleus 77.46 77.22
HORVU5Hr1G094950.6 Barley cytosol, nucleus 76.85 76.39
VIT_06s0004g00200.t01 Wine grape nucleus 56.13 52.62
KRH43005 Soybean nucleus 53.86 50.35
CDY57677 Canola mitochondrion 13.01 50.29
KRH59123 Soybean nucleus 53.4 49.86
Solyc01g028860.2.1 Tomato nucleus 52.65 49.29
GSMUA_Achr4P14820_001 Banana cytosol 24.51 48.94
Os03t0158500-01 Rice nucleus 52.04 48.66
VIT_08s0007g07450.t01 Wine grape cytosol 50.83 48.41
GSMUA_Achr7P27220_001 Banana cytosol 48.26 48.26
PGSC0003DMT400061684 Potato endoplasmic reticulum, plasma membrane 53.71 48.23
CDY21154 Canola nucleus 29.05 47.17
CDY50867 Canola nucleus 28.44 47.0
CDY42891 Canola nucleus 28.44 47.0
AT1G55500.5 Thale cress cytosol 42.97 46.94
Bra036423.1-P Field mustard nucleus 28.74 46.8
CDY69959 Canola nucleus 28.14 46.62
Bra031960.1-P Field mustard nucleus 27.84 46.46
CDY29972 Canola nucleus 28.74 46.34
Bra004105.1-P Field mustard nucleus 27.23 45.45
CDY07437 Canola nucleus 28.9 45.37
CDY43989 Canola nucleus 43.42 45.27
CDY23602 Canola nucleus 42.66 45.19
CDX82538 Canola nucleus 43.72 45.16
Bra001506.1-P Field mustard nucleus 43.57 45.07
CDX75712 Canola nucleus 43.12 44.95
Bra027432.1-P Field mustard nucleus 43.12 44.95
CDY39299 Canola nucleus 28.74 44.92
AT3G03950.3 Thale cress cytosol 29.05 44.86
CDY24182 Canola nucleus 36.61 44.73
CDY50448 Canola cytosol 17.25 44.71
AT3G13460.1 Thale cress cytosol 45.08 44.68
Bra039400.1-P Field mustard nucleus 42.51 44.18
CDY07089 Canola nucleus 42.36 44.03
Bra008509.1-P Field mustard cytosol 27.99 43.74
CDY56132 Canola nucleus 29.2 43.18
CDY52966 Canola cytosol 29.2 43.08
CDX91541 Canola mitochondrion 10.59 42.94
KRG94807 Soybean nucleus 41.0 41.12
Os07t0170300-01 Rice plasma membrane 37.22 40.86
AT5G61020.1 Thale cress cytosol 30.11 40.2
KRH06717 Soybean nucleus 39.94 39.82
KRH70155 Soybean nucleus 37.07 38.89
Bra018951.1-P Field mustard cytosol 13.92 35.52
Bra014253.1-P Field mustard cytosol 15.73 34.9
Bra038524.1-P Field mustard cytosol 11.8 34.67
Os08t0556000-01 Rice nucleus 32.68 34.62
Os04t0608800-01 Rice nucleus 29.2 33.98
Os08t0224200-01 Rice mitochondrion 30.71 32.79
Os01t0679900-01 Rice nucleus 27.38 29.72
Os05t0105600-01 Rice cytosol 26.17 27.12
Os03t0317000-01 Rice plasma membrane 28.44 26.52
Os04t0129300-01 Rice nucleus 26.02 25.48
Os01t0329800-01 Rice cytosol 24.05 22.46
Protein Annotations
EnsemblPlants:Os03t0748000-01EnsemblPlantsGene:Os03g0748000EntrezGene:4334103Gene3D:3.10.590.10GO:GO:0003674GO:GO:0003676
GO:GO:0003723GO:GO:0005488InterPro:IPR007275InterPro:YTH_domainPANTHER:PTHR12357PANTHER:PTHR12357:SF38
PFAM:PF04146PFscan:PS50882ProteinID:ABF98867.1ProteinID:BAF13178.1ProteinID:BAS86375.1ProteinID:EEE59928.1
RefSeq:XP_015631697.1SEG:segUniParc:UPI0000DB4EC0UniProt:Q10CW7MapMan:16.5.2.1:
Description
YT521-B-like protein family protein. (Os03t0748000-01);Similar to YT521-B-like family protein, expressed. (Os03t0748000-02)
Coordinates
chr3:+:30777720..30781828
Molecular Weight (calculated)
71625.6 Da
IEP (calculated)
8.616
GRAVY (calculated)
-0.796
Length
661 amino acids
Sequence
(BLAST)
001: MAAVAPGAGD QATDMMQKLS LESKKEGATP DATKKPAGMP YGSASAGDAQ NAASPVDRSI TPLLQEAVNA NILYQTNGYG PSAYYYPTGY DGSANEWDSR
101: YAAHDGTEMP PSVYGDMYGY GYAPYGPYPS GSPVPTVGHD GQSYGAQHYQ YPGQYYQQPA PTNASHGVNA VNSQSEMPSV AAHQARVPVE SAKASANGTA
201: NGMANTNSSS LARKQTHQNV SVLNNGSYGG GTLQGGPSAN NYGHSGLHSP VQWYDGPVYS NGHQRSNTNS TSYGSNSYSA KNQSQRPTAN LMGMHAQIPS
301: SGMGLTSPSY HTRMYPDNRL YGQYGQYGNA LKTGLGFGSN MYNSRNNGRW GIVDSKYKPR GRASFGFGSE NQDGFTELNR GPRSGGFKHQ KQFGPSVTIA
401: VKGQALPSVG KQENSAIPDK GQFNQEGFPV TYKDAKFFVI KSYSEDDVHK SIKYNVWAST PNGNKKLDAG YREAQEKSSE CPVFLFFSVN TSGQFVGVAE
501: MVGPVDFEKT VDYWQQDKWN GCFPIKWHVV KDVPNNILKH ITLDNNDNKP VTNSRDTQEV KLEQGLEMLK IFKDHISKTS ILDDFGFYEN RQKLMQEKRA
601: KQQLLQGQGS LDNASHEKEK NAIDGKSTAQ KQALSKEGTP IVGEMLNASK SAVESSVTNG N
Best Arabidopsis Sequence Match ( AT3G13460.1 )
(BLAST)
001: MATVAPPADQ ATDLLQKLSL DSPAKASEIP EPNKKTAVYQ YGGVDVHGQV PSYDRSLTPM LPSDAADPSV CYVPNPYNPY QYYNVYGSGQ EWTDYPAYTN
101: PEGVDMNSGI YGENGTVVYP QGYGYAAYPY SPATSPAPQL GGEGQLYGAQ QYQYPNYFPN SGPYASSVAT PTQPDLSANK PAGVKTLPAD SNNVASAAGI
201: TKGSNGSAPV KPTNQATLNT SSNLYGMGAP GGGLAAGYQD PRYAYEGYYA PVPWHDGSKY SDVQRPVSGS GVASSYSKSS TVPSSRNQNY RSNSHYTSVH
301: QPSSVTGYGT AQGYYNRMYQ NKLYGQYGST GRSALGYGSS GYDSRTNGRG WAATDNKYRS WGRGNSYYYG NENNVDGLNE LNRGPRAKGT KNQKGNLDDS
401: LEVKEQTGES NVTEVGEADN TCVVPDREQY NKEDFPVDYA NAMFFIIKSY SEDDVHKSIK YNVWASTPNG NKKLAAAYQE AQQKAGGCPI FLFFSVNASG
501: QFVGLAEMTG PVDFNTNVEY WQQDKWTGSF PLKWHIVKDV PNSLLKHITL ENNENKPVTN SRDTQEVKLE QGLKIVKIFK EHSSKTCILD DFSFYEVRQK
601: TILEKKAKQT QKQVSEEKVT DEKKESATAE SASKESPAAV QTSSDVKVAE NGSVAKPVTG DVVANGC
Arabidopsis Description
ECT2ECT2 [Source:UniProtKB/TrEMBL;Acc:A0A178VBC2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.