Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G13460.1 | CDX75921 | AT3G17510.1 | 16113215 |
| AT3G13460.1 | CDX82366 | AT3G17510.1 | 16113215 |
| AT3G13460.1 | CDX92136 | AT3G17510.1 | 16113215 |
| AT3G13460.1 | CDX95849 | AT3G17510.1 | 16113215 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82538 | Canola | nucleus | 94.95 | 94.06 |
| CDY43989 | Canola | nucleus | 82.65 | 82.65 |
| CDY23602 | Canola | nucleus | 81.07 | 82.37 |
| CDY07089 | Canola | nucleus | 80.28 | 80.03 |
| CDY24182 | Canola | nucleus | 67.67 | 79.3 |
| AT3G13460.1 | Thale cress | cytosol | 80.76 | 76.76 |
| VIT_06s0004g00200.t01 | Wine grape | nucleus | 61.04 | 54.89 |
| CDY57677 | Canola | mitochondrion | 14.67 | 54.39 |
| KRH43005 | Soybean | nucleus | 58.83 | 52.76 |
| KRH59123 | Soybean | nucleus | 58.2 | 52.12 |
| Solyc01g028860.2.1 | Tomato | nucleus | 56.62 | 50.85 |
| CDY05744 | Canola | cytosol | 10.09 | 50.79 |
| CDY07437 | Canola | nucleus | 33.28 | 50.12 |
| CDY39299 | Canola | nucleus | 32.65 | 48.94 |
| GSMUA_Achr7P01490_001 | Banana | nucleus | 43.22 | 48.93 |
| PGSC0003DMT400061684 | Potato | endoplasmic reticulum, plasma membrane | 56.31 | 48.51 |
| CDY56132 | Canola | nucleus | 33.91 | 48.1 |
| CDY50448 | Canola | cytosol | 19.24 | 47.84 |
| GSMUA_Achr4P22630_001 | Banana | nucleus | 46.69 | 47.67 |
| CDY52966 | Canola | cytosol | 33.6 | 47.54 |
| CDY69959 | Canola | nucleus | 29.81 | 47.37 |
| CDY21154 | Canola | nucleus | 30.13 | 46.93 |
| CDX91541 | Canola | mitochondrion | 11.99 | 46.63 |
| CDY29972 | Canola | nucleus | 30.13 | 46.59 |
| GSMUA_Achr4P21380_001 | Banana | nucleus | 48.27 | 46.5 |
| CDY50867 | Canola | nucleus | 29.18 | 46.25 |
| CDY42891 | Canola | nucleus | 29.18 | 46.25 |
| GSMUA_Achr5P02830_001 | Banana | cytosol | 44.64 | 45.94 |
| GSMUA_Achr7P27220_001 | Banana | cytosol | 47.63 | 45.69 |
| GSMUA_Achr4P28430_001 | Banana | nucleus, plastid | 44.01 | 45.37 |
| GSMUA_Achr4P14820_001 | Banana | cytosol | 23.5 | 45.02 |
| CDY51902 | Canola | cytosol | 10.88 | 44.52 |
| EER93461 | Sorghum | nucleus | 45.74 | 44.01 |
| Os03t0748000-01 | Rice | plasma membrane | 44.95 | 43.12 |
| Zm00001d034005_P003 | Maize | plasma membrane | 44.8 | 43.03 |
| TraesCS5B01G391500.1 | Wheat | nucleus | 44.48 | 42.6 |
| KXG40139 | Sorghum | plastid | 47.48 | 42.33 |
| TraesCS5D01G396400.3 | Wheat | nucleus | 44.16 | 42.3 |
| TraesCS5A01G386600.2 | Wheat | nucleus | 44.01 | 42.08 |
| Os03t0158500-01 | Rice | nucleus | 46.85 | 42.01 |
| HORVU5Hr1G094950.6 | Barley | cytosol, nucleus | 44.01 | 41.95 |
| EER93313 | Sorghum | cytosol | 35.96 | 39.86 |
| TraesCS4D01G273200.4 | Wheat | cytosol | 44.95 | 39.42 |
| TraesCS4A01G031600.2 | Wheat | cytosol | 44.8 | 38.96 |
| HORVU4Hr1G072940.4 | Barley | cytosol | 45.58 | 38.95 |
| TraesCS5D01G439100.1 | Wheat | nucleus | 36.12 | 38.95 |
| TraesCS5B01G433000.1 | Wheat | cytosol | 36.44 | 38.76 |
| TraesCS5A01G431200.1 | Wheat | nucleus | 35.96 | 38.71 |
| Zm00001d048424_P003 | Maize | plastid | 45.11 | 38.65 |
| KXG34475 | Sorghum | cytosol | 39.12 | 38.39 |
| TraesCS4B01G274500.2 | Wheat | plastid | 46.37 | 38.33 |
| Os07t0170300-01 | Rice | plasma membrane | 35.33 | 37.21 |
| CDY60520 | Canola | cytosol | 7.73 | 37.12 |
| TraesCS5B01G432900.2 | Wheat | extracellular | 37.54 | 36.73 |
| TraesCS5A01G431100.1 | Wheat | cytosol | 37.07 | 36.6 |
| Zm00001d027731_P012 | Maize | plastid | 46.06 | 36.36 |
| TraesCS5D01G439200.1 | Wheat | cytosol | 36.75 | 36.29 |
| Zm00001d007890_P002 | Maize | mitochondrion | 37.07 | 35.99 |
| CDY56809 | Canola | cytosol | 24.92 | 35.27 |
| CDX87395 | Canola | cytosol | 24.61 | 35.14 |
| CDY22270 | Canola | cytosol | 24.76 | 35.04 |
| HORVU5Hr1G104380.1 | Barley | plastid | 36.44 | 34.95 |
| CDX88524 | Canola | cytosol | 24.29 | 34.84 |
| CDY23562 | Canola | nucleus | 34.07 | 34.84 |
| Zm00001d018896_P002 | Maize | mitochondrion | 38.64 | 34.7 |
| CDY44025 | Canola | nucleus | 33.6 | 34.24 |
| CDY24224 | Canola | nucleus | 33.12 | 34.2 |
| CDY43378 | Canola | nucleus | 33.12 | 34.2 |
| HORVU5Hr1G104390.3 | Barley | plastid | 36.28 | 33.43 |
| CDX94944 | Canola | nucleus | 26.03 | 33.2 |
| CDX93476 | Canola | nucleus | 25.55 | 32.4 |
| CDX79309 | Canola | nucleus | 25.71 | 32.02 |
| CDX68000 | Canola | nucleus | 25.55 | 31.83 |
| CDX90116 | Canola | nucleus | 25.39 | 30.9 |
| CDY67303 | Canola | nucleus | 25.39 | 30.9 |
| CDY02802 | Canola | nucleus | 25.87 | 30.71 |
| CDX88661 | Canola | nucleus | 24.29 | 30.2 |
| CDY58572 | Canola | nucleus | 24.13 | 30.18 |
| CDY32718 | Canola | nucleus | 24.92 | 29.87 |
| CDY11758 | Canola | nucleus, plastid | 25.39 | 29.06 |
| CDY43306 | Canola | cytosol | 27.92 | 28.87 |
| CDX93645 | Canola | nucleus | 27.29 | 28.27 |
Protein Annotations
| EnsemblPlants:CDX75712 | EnsemblPlantsGene:GSBRNA2T00123625001 | Gene3D:3.10.590.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR007275 | InterPro:YTH_domain | ncoils:Coil | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF63 |
| PFAM:PF04146 | PFscan:PS50882 | ProteinID:CDX75712 | ProteinID:CDX75712.1 | SEG:seg | UniParc:UPI0004EEE530 |
| MapMan:16.5.2.1 | : | : | : | : | : |
Description
BnaC03g37950D
Coordinates
chrLK031805:-:98023..101550
Molecular Weight (calculated)
68745.6 Da
IEP (calculated)
5.428
GRAVY (calculated)
-0.749
Length
634 amino acids
Sequence
(BLAST)
(BLAST)
001: MATVASSPAD QSADMLQNLS LDSQAKAASE IPEPKKTAVY QYGGVDLNGQ VPSFDRSLSP LLPSDAVDPS VCYVPNAYQQ PFYYGYGNGD WSEYTGYQNP
101: EGVDMNSGYG YAAYPYSPAT SPAPQVGGDG QLFGAQQYQY PTFFPTGPVS VATPTQGDLA ANKAGGLKPA ESKNVASAAG MTKGSNGSAA GKPNNQTAFN
201: TSSTLYGNGA YAGGYAAGYQ DARFNYDGYY GTGYSDVQRP VASSYSKANS VRNQNYRSNS NYTGVHQPAS MTGYGTHGYY SKMNQSKLYG NYGSSGRSGL
301: GFSSSGYDSR TNGRGWVSAT DNRYRGFGRG NSFFYGNENN ADGLNELNRG PRARGAKNQK ENSEDSLEVK EQTSESNVAE SVETENTCIV PDREQYNKED
401: FPVDYADAMF FIIKSYSEDD VHKSIKYNVW ASTPNGNKKL AAAYQEAQQK PGGCPIFLFF SVNASGQFVG LAEMIGPVDF NTNVDCWQQD KWTGSFPLKW
501: HIVKDVPNSL LKHITLENNE NKPVTNSRDT QEVKLEQGLK IVKIFKEHTS KTCILDDFSF YEVRQKTILE KKAKQNQTQK QVSEEKTTTD EKKETATADS
601: ANKESPPAAQ TTGGVKVDEN GAVAKPVVAV ANGC
101: EGVDMNSGYG YAAYPYSPAT SPAPQVGGDG QLFGAQQYQY PTFFPTGPVS VATPTQGDLA ANKAGGLKPA ESKNVASAAG MTKGSNGSAA GKPNNQTAFN
201: TSSTLYGNGA YAGGYAAGYQ DARFNYDGYY GTGYSDVQRP VASSYSKANS VRNQNYRSNS NYTGVHQPAS MTGYGTHGYY SKMNQSKLYG NYGSSGRSGL
301: GFSSSGYDSR TNGRGWVSAT DNRYRGFGRG NSFFYGNENN ADGLNELNRG PRARGAKNQK ENSEDSLEVK EQTSESNVAE SVETENTCIV PDREQYNKED
401: FPVDYADAMF FIIKSYSEDD VHKSIKYNVW ASTPNGNKKL AAAYQEAQQK PGGCPIFLFF SVNASGQFVG LAEMIGPVDF NTNVDCWQQD KWTGSFPLKW
501: HIVKDVPNSL LKHITLENNE NKPVTNSRDT QEVKLEQGLK IVKIFKEHTS KTCILDDFSF YEVRQKTILE KKAKQNQTQK QVSEEKTTTD EKKETATADS
601: ANKESPPAAQ TTGGVKVDEN GAVAKPVVAV ANGC
001: MATVAPPADQ ATDLLQKLSL DSPAKASEIP EPNKKTAVYQ YGGVDVHGQV PSYDRSLTPM LPSDAADPSV CYVPNPYNPY QYYNVYGSGQ EWTDYPAYTN
101: PEGVDMNSGI YGENGTVVYP QGYGYAAYPY SPATSPAPQL GGEGQLYGAQ QYQYPNYFPN SGPYASSVAT PTQPDLSANK PAGVKTLPAD SNNVASAAGI
201: TKGSNGSAPV KPTNQATLNT SSNLYGMGAP GGGLAAGYQD PRYAYEGYYA PVPWHDGSKY SDVQRPVSGS GVASSYSKSS TVPSSRNQNY RSNSHYTSVH
301: QPSSVTGYGT AQGYYNRMYQ NKLYGQYGST GRSALGYGSS GYDSRTNGRG WAATDNKYRS WGRGNSYYYG NENNVDGLNE LNRGPRAKGT KNQKGNLDDS
401: LEVKEQTGES NVTEVGEADN TCVVPDREQY NKEDFPVDYA NAMFFIIKSY SEDDVHKSIK YNVWASTPNG NKKLAAAYQE AQQKAGGCPI FLFFSVNASG
501: QFVGLAEMTG PVDFNTNVEY WQQDKWTGSF PLKWHIVKDV PNSLLKHITL ENNENKPVTN SRDTQEVKLE QGLKIVKIFK EHSSKTCILD DFSFYEVRQK
601: TILEKKAKQT QKQVSEEKVT DEKKESATAE SASKESPAAV QTSSDVKVAE NGSVAKPVTG DVVANGC
101: PEGVDMNSGI YGENGTVVYP QGYGYAAYPY SPATSPAPQL GGEGQLYGAQ QYQYPNYFPN SGPYASSVAT PTQPDLSANK PAGVKTLPAD SNNVASAAGI
201: TKGSNGSAPV KPTNQATLNT SSNLYGMGAP GGGLAAGYQD PRYAYEGYYA PVPWHDGSKY SDVQRPVSGS GVASSYSKSS TVPSSRNQNY RSNSHYTSVH
301: QPSSVTGYGT AQGYYNRMYQ NKLYGQYGST GRSALGYGSS GYDSRTNGRG WAATDNKYRS WGRGNSYYYG NENNVDGLNE LNRGPRAKGT KNQKGNLDDS
401: LEVKEQTGES NVTEVGEADN TCVVPDREQY NKEDFPVDYA NAMFFIIKSY SEDDVHKSIK YNVWASTPNG NKKLAAAYQE AQQKAGGCPI FLFFSVNASG
501: QFVGLAEMTG PVDFNTNVEY WQQDKWTGSF PLKWHIVKDV PNSLLKHITL ENNENKPVTN SRDTQEVKLE QGLKIVKIFK EHSSKTCILD DFSFYEVRQK
601: TILEKKAKQT QKQVSEEKVT DEKKESATAE SASKESPAAV QTSSDVKVAE NGSVAKPVTG DVVANGC
Arabidopsis Description
ECT2ECT2 [Source:UniProtKB/TrEMBL;Acc:A0A178VBC2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.