Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018708.1-P | Field mustard | nucleus | 96.73 | 97.37 |
| CDY43306 | Canola | cytosol | 91.34 | 91.19 |
| AT1G48110.2 | Thale cress | nucleus | 76.31 | 73.08 |
| KRH36908 | Soybean | cytosol | 37.75 | 52.03 |
| CDY57677 | Canola | mitochondrion | 12.91 | 46.2 |
| CDY51902 | Canola | cytosol | 11.27 | 44.52 |
| VIT_05s0020g00460.t01 | Wine grape | cytosol | 48.86 | 41.88 |
| KRH02430 | Soybean | cytosol | 47.06 | 41.5 |
| KRH50636 | Soybean | cytosol | 46.9 | 41.3 |
| Solyc12g099090.1.1 | Tomato | cytosol | 44.44 | 39.42 |
| CDY50448 | Canola | cytosol | 16.18 | 38.82 |
| KRH11876 | Soybean | endoplasmic reticulum | 44.44 | 38.8 |
| PGSC0003DMT400011739 | Potato | cytosol | 44.12 | 38.63 |
| CDX88524 | Canola | cytosol | 25.65 | 35.52 |
| CDX87395 | Canola | cytosol | 25.65 | 35.36 |
| CDY22270 | Canola | cytosol | 25.16 | 34.38 |
| CDX91541 | Canola | mitochondrion | 9.15 | 34.36 |
| CDY56809 | Canola | cytosol | 24.84 | 33.93 |
| CDY50867 | Canola | nucleus | 21.41 | 32.75 |
| CDY42891 | Canola | nucleus | 21.41 | 32.75 |
| CDY69959 | Canola | nucleus | 21.08 | 32.33 |
| CDY07437 | Canola | nucleus | 21.9 | 31.83 |
| CDY21154 | Canola | nucleus | 21.08 | 31.7 |
| CDY29972 | Canola | nucleus | 21.08 | 31.46 |
| CDY39299 | Canola | nucleus | 21.73 | 31.44 |
| CDX79309 | Canola | nucleus | 25.98 | 31.24 |
| CDX68000 | Canola | nucleus | 25.98 | 31.24 |
| CDY24182 | Canola | nucleus | 27.29 | 30.87 |
| CDY05744 | Canola | cytosol | 6.21 | 30.16 |
| CDY52966 | Canola | cytosol | 21.9 | 29.91 |
| Os03t0317000-01 | Rice | plasma membrane | 34.48 | 29.76 |
| CDY56132 | Canola | nucleus | 21.73 | 29.75 |
| CDY23602 | Canola | nucleus | 29.25 | 28.69 |
| CDY44025 | Canola | nucleus | 29.09 | 28.62 |
| CDY07089 | Canola | nucleus | 29.74 | 28.62 |
| CDY23562 | Canola | nucleus | 28.92 | 28.55 |
| CDY43989 | Canola | nucleus | 29.25 | 28.23 |
| TraesCS4B01G179100.3 | Wheat | cytosol, nucleus, plastid | 32.68 | 28.01 |
| CDX82538 | Canola | nucleus | 29.25 | 27.97 |
| TraesCS4D01G180500.5 | Wheat | cytosol, nucleus, plastid | 32.52 | 27.91 |
| GSMUA_Achr1P24980_001 | Banana | nucleus | 37.75 | 27.83 |
| CDY43378 | Canola | nucleus | 27.78 | 27.69 |
| CDY24224 | Canola | nucleus | 27.78 | 27.69 |
| TraesCS4A01G125600.3 | Wheat | cytosol, nucleus, plastid | 32.52 | 27.68 |
| CDX75712 | Canola | nucleus | 28.27 | 27.29 |
| CDX90116 | Canola | nucleus | 23.2 | 27.26 |
| CDY67303 | Canola | nucleus | 23.2 | 27.26 |
| CDY58572 | Canola | nucleus | 22.55 | 27.22 |
| CDX88661 | Canola | nucleus | 22.39 | 26.86 |
| CDX94944 | Canola | nucleus | 21.57 | 26.56 |
| GSMUA_Achr8P29890_001 | Banana | cytosol | 34.97 | 26.39 |
| CDY11758 | Canola | nucleus, plastid | 23.69 | 26.17 |
| HORVU4Hr1G052390.3 | Barley | golgi | 32.03 | 26.13 |
| CDX93476 | Canola | nucleus | 21.24 | 26.0 |
| CDY32718 | Canola | nucleus | 22.22 | 25.71 |
| CDY02802 | Canola | nucleus | 22.39 | 25.66 |
| Os01t0329800-01 | Rice | cytosol | 28.92 | 25.0 |
| TraesCS3B01G232300.2 | Wheat | cytosol | 27.94 | 24.89 |
| TraesCS3A01G199100.2 | Wheat | cytosol | 27.94 | 24.82 |
| TraesCS3D01G199400.2 | Wheat | cytosol | 27.78 | 24.71 |
| KXG24185 | Sorghum | nucleus | 28.92 | 24.15 |
| Zm00001d034996_P005 | Maize | cytosol | 27.12 | 24.13 |
| Zm00001d049729_P008 | Maize | cytosol | 28.27 | 24.03 |
| HORVU3Hr1G045890.2 | Barley | endoplasmic reticulum, peroxisome, plasma membrane | 24.84 | 23.24 |
| Zm00001d010826_P001 | Maize | cytosol | 15.36 | 22.71 |
| TraesCS1B01G128700.1 | Wheat | cytosol | 25.98 | 22.62 |
| TraesCS1A01G105700.1 | Wheat | cytosol | 25.65 | 22.36 |
| OQU77486 | Sorghum | cytosol | 25.82 | 22.32 |
| TraesCS1D01G109300.1 | Wheat | cytosol | 25.65 | 22.24 |
| CDY60520 | Canola | cytosol | 4.58 | 21.21 |
Protein Annotations
| EnsemblPlants:CDX93645 | EnsemblPlantsGene:GSBRNA2T00156332001 | Gene3D:3.10.590.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR007275 | InterPro:YTH_domain | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF22 | PFAM:PF04146 |
| PFscan:PS50882 | ProteinID:CDX93645 | ProteinID:CDX93645.1 | SEG:seg | UniParc:UPI0004EDB350 | MapMan:16.5.2.1 |
Description
BnaA06g04030D
Coordinates
chrLK031876:-:1117948..1120639
Molecular Weight (calculated)
67635.1 Da
IEP (calculated)
6.657
GRAVY (calculated)
-0.752
Length
612 amino acids
Sequence
(BLAST)
(BLAST)
001: MYTSEGAQAS DFVADQGIYY HPVDPNYAYY CTGYESPGEW ENHQMFFGVD GSQLQYQGGQ NDNSPYIYYT PSYGYAQSPY NPFNPYIPGA DSPFQQYYPP
101: LPPYQNVASS GAFVPYAAAH PDTVSSSSAN SLVETGSGAN RRGSRNRNAS AADGIQRNAS EKPRPNPGGQ NRSLSTEKRV STAFPALQGK AISVSTQPVE
201: AVSSSRVSSS GQLDIAPPPE RNGLSSTATN NNNPRPKLYG VHSNISSRSK GPRSQLIVKA YTTKAGNADA EGNIVIDPNQ YNKEDLRIDY TNAKFFVIKS
301: YSEDDVHKSI KYSVWSSTLH GNKKLQSAYE DAQRIATEKS CECPIFLFFS VNASGLFCGM AEMTGPVSFE KDMDFWQQDK WSGSFPVKWH IIKDVPNSYF
401: RHIILHNNEN KPVTNSRDTQ EIMMKQGLEV LKIFKGHAER TSLLDDFAYY ENRQRVMHDE RNRLPYRSFL SPVPVTRPDL SDRNKKNSVD SFKITSSEDP
501: SKSEGNEEKE GTKEDTSILI QKKITSLTVS PTDTDFIPTT GSHLNQSQAK SKPSPSVSDK KTDPDPPEVV DSPLSEDNDT VKVGSLPIKV TGSPPIVTVG
601: TIPLDPSSLQ KK
101: LPPYQNVASS GAFVPYAAAH PDTVSSSSAN SLVETGSGAN RRGSRNRNAS AADGIQRNAS EKPRPNPGGQ NRSLSTEKRV STAFPALQGK AISVSTQPVE
201: AVSSSRVSSS GQLDIAPPPE RNGLSSTATN NNNPRPKLYG VHSNISSRSK GPRSQLIVKA YTTKAGNADA EGNIVIDPNQ YNKEDLRIDY TNAKFFVIKS
301: YSEDDVHKSI KYSVWSSTLH GNKKLQSAYE DAQRIATEKS CECPIFLFFS VNASGLFCGM AEMTGPVSFE KDMDFWQQDK WSGSFPVKWH IIKDVPNSYF
401: RHIILHNNEN KPVTNSRDTQ EIMMKQGLEV LKIFKGHAER TSLLDDFAYY ENRQRVMHDE RNRLPYRSFL SPVPVTRPDL SDRNKKNSVD SFKITSSEDP
501: SKSEGNEEKE GTKEDTSILI QKKITSLTVS PTDTDFIPTT GSHLNQSQAK SKPSPSVSDK KTDPDPPEVV DSPLSEDNDT VKVGSLPIKV TGSPPIVTVG
601: TIPLDPSSLQ KK
001: MYTSEAAPDF VVDQGMYYPV DASYGYYCTG YESPGDWENH QMFFGVDGSE VQYTGGQNEN SPYICYTPSY GYAQSPYNPF NPYIPGASIG VDSAFVAPQQ
101: FYSIPPYQSV ATSPTFVPYA IQPEIVSNSS TNSLVETGSA NRGRSDGRGS RQRSGTATAG LQRNDPKLPA GNSLGKISEK PRPNSGQSRQ SEMDKSDSTS
201: SSGQARQGRV TSVSAQPVDV VSSSRVSSFR QLDIAPPQLN DFSKIATNNN NIRPKLYGGH ANIIPDTVRE QNRGRRSRAL GNQLIVKAYT TKAGNADAEG
301: NIVINPSQYN KEDLRIDYSN AKFFVIKSYS EDDVHKSIKY NVWSSTLHGN KKLQSAYEDA QRIATEKSCE CPIFLFFSVN ASGLFCGMAE MTGPVSFDKD
401: MDFWQQDKWS GSFPVKWHII KDVPNSYFRH IILQNNENKP VTNSRDTQEI MLKQGLEVLK IFKDHMERTS LLDDFVYYES RQRVMQDERT RLPYRTFLND
501: LPLPRPDLSD RNKKTPLESF KKPSVISAKT EELPSKSEGN EETTVKEGNE EDTSSTQKKI SSLTIDPSGT DSNPTTVSHL NQKSQAKSKP NSSGSLKKTD
601: PSEVVDASLS DKNDSFKVTG SPAILTVGTI PLDPKSLQK
101: FYSIPPYQSV ATSPTFVPYA IQPEIVSNSS TNSLVETGSA NRGRSDGRGS RQRSGTATAG LQRNDPKLPA GNSLGKISEK PRPNSGQSRQ SEMDKSDSTS
201: SSGQARQGRV TSVSAQPVDV VSSSRVSSFR QLDIAPPQLN DFSKIATNNN NIRPKLYGGH ANIIPDTVRE QNRGRRSRAL GNQLIVKAYT TKAGNADAEG
301: NIVINPSQYN KEDLRIDYSN AKFFVIKSYS EDDVHKSIKY NVWSSTLHGN KKLQSAYEDA QRIATEKSCE CPIFLFFSVN ASGLFCGMAE MTGPVSFDKD
401: MDFWQQDKWS GSFPVKWHII KDVPNSYFRH IILQNNENKP VTNSRDTQEI MLKQGLEVLK IFKDHMERTS LLDDFVYYES RQRVMQDERT RLPYRTFLND
501: LPLPRPDLSD RNKKTPLESF KKPSVISAKT EELPSKSEGN EETTVKEGNE EDTSSTQKKI SSLTIDPSGT DSNPTTVSHL NQKSQAKSKP NSSGSLKKTD
601: PSEVVDASLS DKNDSFKVTG SPAILTVGTI PLDPKSLQK
Arabidopsis Description
ECT7evolutionarily conserved C-terminal region 7 [Source:TAIR;Acc:AT1G48110]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.