Factsheet for VIT_05s0020g00460.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plasma membrane 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36908	Soybean	cytosol	43.42	69.82
KRH02430	Soybean	cytosol	61.62	63.4
KRH50636	Soybean	cytosol	61.62	63.31
PGSC0003DMT400011739	Potato	cytosol	57.0	58.23
Solyc12g099090.1.1	Tomato	cytosol	54.62	56.52
KRH11876	Soybean	endoplasmic reticulum	55.32	56.35
AT3G17330.1	Thale cress	nucleus	41.74	50.08
Bra018708.1-P	Field mustard	nucleus	42.16	49.51
CDY43306	Canola	cytosol	42.16	49.1
CDX93645	Canola	nucleus	41.88	48.86
AT1G48110.2	Thale cress	nucleus	43.14	48.2
VIT_19s0085g01100.t01	Wine grape	nucleus	28.29	34.18
GSMUA_Achr1P24980_001	Banana	nucleus	39.64	34.1
Os03t0317000-01	Rice	plasma membrane	33.61	33.85
VIT_01s0010g03690.t01	Wine grape	cytosol	26.75	33.39
GSMUA_Achr8P29890_001	Banana	cytosol	37.25	32.8
TraesCS4D01G180500.5	Wheat	cytosol, nucleus, plastid	31.37	31.42
VIT_09s0054g01600.t01	Wine grape	nucleus	29.27	31.38
TraesCS4B01G179100.3	Wheat	cytosol, nucleus, plastid	31.37	31.37
TraesCS4A01G125600.3	Wheat	cytosol, nucleus, plastid	31.37	31.15
VIT_06s0004g00200.t01	Wine grape	nucleus	30.53	30.92
VIT_08s0007g07450.t01	Wine grape	cytosol	29.13	29.97
HORVU4Hr1G052390.3	Barley	golgi	30.53	29.07
Os01t0329800-01	Rice	cytosol	27.45	27.68
TraesCS3A01G199100.2	Wheat	cytosol	26.61	27.58
TraesCS3D01G199400.2	Wheat	cytosol	26.47	27.47
TraesCS3B01G232300.2	Wheat	cytosol	26.33	27.37
Zm00001d049729_P008	Maize	cytosol	26.89	26.67
HORVU3Hr1G045890.2	Barley	endoplasmic reticulum, peroxisome, plasma membrane	24.37	26.61
Zm00001d034996_P005	Maize	cytosol	25.21	26.16
VIT_12s0035g00970.t01	Wine grape	plastid	25.77	25.99
KXG24185	Sorghum	nucleus	26.47	25.78
TraesCS1B01G128700.1	Wheat	cytosol	25.35	25.75
VIT_11s0065g00160.t01	Wine grape	nucleus	26.33	25.58
TraesCS1D01G109300.1	Wheat	cytosol	25.07	25.35
TraesCS1A01G105700.1	Wheat	cytosol	24.51	24.93
Zm00001d010826_P001	Maize	cytosol	14.43	24.88
OQU77486	Sorghum	cytosol	22.41	22.6

Protein Annotations

EntrezGene:100854837	wikigene:100854837	MapMan:16.5.2.1	Gene3D:3.10.590.10	ProteinID:CCB50274	ProteinID:CCB50274.1
UniProt:F6HE16	EMBL:FN595749	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0005488	GO:GO:0006139	GO:GO:0006259	GO:GO:0006306	GO:GO:0008150	GO:GO:0008152
GO:GO:0008168	GO:GO:0009987	GO:GO:0016740	InterPro:IPR007275	EntrezGene:LOC100854837	wikigene:LOC100854837
PFAM:PF04146	PFscan:PS50882	PANTHER:PTHR12357	PANTHER:PTHR12357:SF22	TIGR:TC70331	UniParc:UPI00021081BE
ArrayExpress:VIT_05s0020g00460	EnsemblPlantsGene:VIT_05s0020g00460	EnsemblPlants:VIT_05s0020g00460.t01	unigene:Vvi.10145	unigene:Vvi.11194	RefSeq:XP_003631985
RefSeq:XP_003631985.1	RefSeq:XP_010649654.1	InterPro:YTH_domain	SEG:seg	:	:

Description

No Description!

Coordinates

chr5:-:2377916..2383042

Molecular Weight (calculated)

79163.7 Da

IEP (calculated)

6.291

GRAVY (calculated)

-0.593

Length

714 amino acids

Sequence
(BLAST)

001: MEMYVSENGN AETYLIQGTE SNPLLTTQLV EQIQAMYNEG TPEFVVDQNL YYPTATNYGY YCTGFESPGE WDDHHRIFGL DGPDIQYSGA QTDSLPYVYY
101: TPSYGYAQSP YNPYNPYIPG AMIGVDAPFV GTQQYYTMPP YQNPVSSPAY IPIVVQSRPD IIPNSSPDPL LDTGLAAANR PDGRGRKHNL SSASAAFTMP
201: SQRPASNQTH SFTRVSDVPR AIAGSSKQPV THGSVTSGSF PGPASSHALQ GRSTPDSIQA MDNVPHGRVL PHHNQLKLAI PSGNGMSDFG SNAQLRAPMD
301: KFRPKFNYGR AQNDANGSQD GLSEQNRGPR INRSENQLAV KAYTTKAGDT NAQGNIIIYT DQYNKDDFPV DYVDAKFFVI KSYSEDDVHK SIKYNVWSST
401: PNGNKKLENA YEDAQRIALG KRRGCPIFLF FSVNASGQFC GVAEMIGPVD FHKDMDFWQQ DKWSGSFPVK WHIIKDVPNT NFRHIILENN ENKPVTNSRD
501: TQEIRFKQGL EMLKIFKNHT TKTSLLDDFM YYENRQRIMQ DEKTRLLIKS YESPFFVPPL DPPRKLNFVI DLPPSEEKMT KQTDVRSLEK PVATSTATDQ
601: VSLKSDDINR SSMNEKCSTA ETKDDTVSTL KIGSLTINPK QVESIPTMAA APPTPAGTVV GTESVDVVTV GSMPVKVNGF AESPGLFTFG TIPLDPRTLQ
701: LEKGVLFGKN GPPR

Best Arabidopsis Sequence Match ( AT1G48110.1 )
(BLAST)

001: MYTSEAAPDF VVDQGMYYPV DASYGYYCTG YESPGDWENH QMFFGVDGSE VQYTGGQNEN SPYICYTPSY GYAQSPYNPF NPYIPGASIG VDSAFVAPQQ
101: FYSIPPYQSV ATSPTFVPYA IQPEIVSNSS TNSLVETGSA NRGRSDGRGS RQRSGTATAG LQRNDPKLPA GNSLGKISEK PRPNSGQSRQ SEMDKSDSTS
201: SSGQARQGRV TSVSAQPVDV VSSSRVSSFR QLDIAPPQLN DFSKIATNNN NIRPKLYGGH ANIIPDTVRE QNRGRRSRAL GNQLIVKAYT TKAGNADAEG
301: NIVINPSQYN KEDLRIDYSN AKFFVIKSYS EDDVHKSIKY NVWSSTLHGN KKLQSAYEDA QRIATEKSCE CPIFLFFSVN ASGLFCGMAE MTGPVSFDKD
401: MDFWQQDKWS GSFPVKWHII KDVPNSYFRH IILQNNENKP VTNSRDTQEI MLKQGLEVLK IFKDHMERTS LLDDFVYYES RQRVMQDERT RLPYRTFLND
501: LPLPRPDLSD RNKKTPLESF KKPSVISAKT EELPSKSEGN EETTVKEGNE EDTSSTQKKI SSLTIDPSGT DSNPTTVSHL NQKSQAKSKP NSSGSLKKTD
601: PSEVVDASLS DKNDSFKVTG SPAILTVGTI PLDPKSLQK

Arabidopsis Description

ECT7evolutionarily conserved C-terminal region 7 [Source:TAIR;Acc:AT1G48110]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.