Factsheet for Os03t0317000-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plastid

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G179100.3	Wheat	cytosol, nucleus, plastid	65.3	64.85
TraesCS4D01G180500.5	Wheat	cytosol, nucleus, plastid	65.02	64.66
TraesCS4A01G125600.3	Wheat	cytosol, nucleus, plastid	65.16	64.26
HORVU4Hr1G052390.3	Barley	golgi	61.64	58.27
KRH36908	Soybean	cytosol	26.94	43.02
AT3G17330.1	Thale cress	nucleus	29.62	35.29
Bra018708.1-P	Field mustard	nucleus	29.9	34.87
CDX93645	Canola	nucleus	29.76	34.48
CDY43306	Canola	cytosol	29.76	34.42
KRH50636	Soybean	cytosol	33.57	34.24
KRH02430	Soybean	cytosol	33.43	34.15
AT1G48110.2	Thale cress	nucleus	30.32	33.65
VIT_05s0020g00460.t01	Wine grape	cytosol	33.85	33.61
Solyc12g099090.1.1	Tomato	cytosol	31.17	32.03
PGSC0003DMT400011739	Potato	cytosol	30.89	31.33
KRH11876	Soybean	endoplasmic reticulum	30.89	31.24
Os01t0679900-01	Rice	nucleus	26.52	30.87
GSMUA_Achr1P24980_001	Banana	nucleus	34.98	29.88
Os04t0608800-01	Rice	nucleus	23.41	29.23
GSMUA_Achr8P29890_001	Banana	cytosol	33.15	28.98
Os07t0170300-01	Rice	plasma membrane	24.54	28.9
Os03t0748000-01	Rice	plasma membrane	26.52	28.44
Os08t0556000-01	Rice	nucleus	24.82	28.21
Os08t0224200-01	Rice	mitochondrion	23.98	27.46
Os03t0158500-01	Rice	nucleus	25.81	25.88
Os01t0329800-01	Rice	cytosol	22.99	23.02
Os05t0105600-01	Rice	cytosol	20.59	22.88
Os04t0129300-01	Rice	nucleus	20.59	21.63

Protein Annotations

EMBL:AK099818	EnsemblPlants:Os03t0317000-01	EnsemblPlantsGene:Os03g0317000	EntrezGene:4332656	Gene3D:3.10.590.10	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357
PANTHER:PTHR12357:SF60	PFAM:PF04146	PFscan:PS50882	ProteinID:ABF95625.1	ProteinID:BAF11855.1	ProteinID:BAS83908.1
RefSeq:XP_015632074.1	RefSeq:XP_015632075.1	UniParc:UPI0000DB45F2	UniProt:Q10MA6	MapMan:16.5.2.1	:

Description

Similar to High-glucose-regulated protein 8-like. (Os03t0317000-01)

Coordinates

chr3:+:11402649..11408087

Molecular Weight (calculated)

77050.2 Da

IEP (calculated)

5.522

GRAVY (calculated)

-0.657

Length

709 amino acids

Sequence
(BLAST)

001: MMPGFGTSSS MGSASHPARI EYNTSSNVSS QYIYEQGLYY PATNGYAYYA GFEPPVEWSD HTNFVGVDGQ NLQLSNENLP YVYCTPGYGF SYYSPDQYTY
101: MPGMVMGVDG SFVGSQQYFA SPYQLPGSPS GFFPMSIQPT TDFSSTVSAE PPLLSTGTGT SAVASRLANT SMKNKYQMSG NTAPASQTAP SGSPAVGRPQ
201: QAYENESTNK PSNPPDANMS RRDKSSTSLV TVPVDASSTD KDGKSDEGNQ SKEHVQSIQV TSGPMSGESG QGKATSNSTL EKIMIHPDQY NKVHFPVDHP
301: DAKFFVIKSY SEDDVHKSIK YNVWSSTPNG NKRLDAAYSD VQGRALGKCP IFLFFSVNAS GQFCGVAEMV GPVDFHKDMD FWQQDKWSGS FPVKWHLVKD
401: VPNSTFRHII LENNENKPVT NSRDTQEIPF KSGTNMLKLF KDGPLTTSIL DDFSFYEGRQ KAMLEEKCRC SGRNFDVRMY VPAFIAKSSV VAVGEPSEVG
501: KGQFSSKDLH SGDVEQDNGA CEQPDKLNQM KDILATEALK TDGGAFVGQL EHAKTNQGSL DARVDHQSEH CSCSNPPENG ERKPDSLSEL VKLNGKSQRD
601: SEAQPGINLS EPNYSSVKKG LPEEFCGQNP SNFMKEGGAG TVEDRKSTKF VTKSQGFPSS RVNKEAKGNG NEMARITTTG VVKVGSVHIK VNVAGEPSSE
701: IIGDENGLP

Best Arabidopsis Sequence Match ( AT3G17330.1 )
(BLAST)

001: MYTEGASDFV IDQSMYYPAY YSSGYDSSVG LQGGQNENAP YICYTPSYGY AQSPYNPYNP YIPGASIGVD SSFVGFQQYY SDPPYESAAS SPTYVPYVIQ
101: PDMVSNSSTD SLVANGGQSD GRGSMQRNGS AIAGLPKDAP KSTTTGQYKQ PGIPKNVSTT ASAHSLQGKT AYANTLLPYG KSDIANGVSS IASYSYKPCS
201: KIYDARGDNN TTGSTYTSEQ NRGSRTRRSR NQLIVKAYTT KAGNADAEGN IVINPDRYNK EDFSIEYSDA RFFVIKSYSE DDVHKSIKYG VWSSTLNGNK
301: KLQSVYEDAQ RIATEKSREC PIFLFFSVNS SGLFCGVAEM TGPVSFDRDM DFWQQDKWSG SFPVKWHIIK DVPNSYFRHI ILHNNENKPV TNSRDTQEII
401: LKQGLEVLKL FKHHAEKTSL LDDFMYYEDR QRLMQEERAR LPFRTFRRPF PVLNLDFSDR SKKSSKDVVK KPSVTSAETK VVQLKNSDGD EKSNTQEATD
501: DSTPSTLKFG SLAIKPTAGT TFNPTQPKPK PTPSLGSDHK SDSSEEVTGS LADDIVSVGS LPIKVKGSKE LSSKIAAVGT SPLSTQDQFR SKPGF

Arabidopsis Description

ECT6At3g17330 [Source:UniProtKB/TrEMBL;Acc:Q1JPL5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.