Factsheet for Solyc12g099090.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	plasma membrane
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400011739	Potato	cytosol	92.61	91.42
KRH36908	Soybean	cytosol	38.7	60.14
VIT_05s0020g00460.t01	Wine grape	cytosol	56.52	54.62
KRH02430	Soybean	cytosol	52.75	52.45
KRH50636	Soybean	cytosol	51.88	51.51
KRH11876	Soybean	endoplasmic reticulum	47.54	46.79
Bra018708.1-P	Field mustard	nucleus	40.0	45.39
CDY43306	Canola	cytosol	40.0	45.02
CDX93645	Canola	nucleus	39.42	44.44
AT1G48110.2	Thale cress	nucleus	41.01	44.29
AT3G17330.1	Thale cress	nucleus	37.68	43.7
Os03t0317000-01	Rice	plasma membrane	32.03	31.17
GSMUA_Achr1P24980_001	Banana	nucleus	36.52	30.36
TraesCS4D01G180500.5	Wheat	cytosol, nucleus, plastid	31.16	30.15
TraesCS4B01G179100.3	Wheat	cytosol, nucleus, plastid	31.16	30.11
GSMUA_Achr8P29890_001	Banana	cytosol	35.07	29.84
TraesCS4A01G125600.3	Wheat	cytosol, nucleus, plastid	31.01	29.76
HORVU4Hr1G052390.3	Barley	golgi	30.72	28.27
Solyc01g103540.2.1	Tomato	nucleus	21.88	27.21
TraesCS3D01G199400.2	Wheat	cytosol	26.67	26.74
TraesCS3A01G199100.2	Wheat	cytosol	26.67	26.71
TraesCS3B01G232300.2	Wheat	cytosol	26.52	26.64
Solyc01g028860.2.1	Tomato	nucleus	27.25	26.63
Solyc05g032850.2.1	Tomato	nucleus	22.61	25.83
Os01t0329800-01	Rice	cytosol	26.38	25.71
Zm00001d010826_P001	Maize	cytosol	15.36	25.6
HORVU3Hr1G045890.2	Barley	endoplasmic reticulum, peroxisome, plasma membrane	24.06	25.38
Zm00001d034996_P005	Maize	cytosol	24.64	24.71
Zm00001d049729_P008	Maize	cytosol	25.65	24.58
KXG24185	Sorghum	nucleus	25.65	24.15
TraesCS1B01G128700.1	Wheat	cytosol	23.91	23.47
TraesCS1D01G109300.1	Wheat	cytosol	23.48	22.95
TraesCS1A01G105700.1	Wheat	cytosol	23.19	22.79
OQU77486	Sorghum	cytosol	22.9	22.32

Protein Annotations

EnsemblPlants:Solyc12g099090.1.1	EnsemblPlantsGene:Solyc12g099090.1	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF22	PFAM:PF04146
PFscan:PS50882	SEG:seg	UniParc:UPI000276A533	UniProt:K4DHT0	MapMan:16.5.2.1	:

Description

No Description!

Coordinates

chr12:+:66365360..66369142

Molecular Weight (calculated)

75325.5 Da

IEP (calculated)

6.919

GRAVY (calculated)

-0.508

Length

690 amino acids

Sequence
(BLAST)

001: MYNEGAPEFV VDQGLYYPPA TNYGYFCTGL ESPGDWDGHQ GFFGLDGQDI QYMDAQTESF PYVYYTPNYG CAQSSYNPYN PYIPGAVVGA DGPCAGPQHY
101: YTIPPYENLG SSSYFPMAVP STSSIPENAA DPIMDSVISS TNRADDLRLK RNLSPTSPIF TPTSLGPASG YKSASNRGSE SAKINAASGK QHVSHGFSSP
201: SSQVHPGTVA QAIGSIIHGK VLSNHGQLRA PLPPEIDLSN HRSGAHDQAN TDKIRTKFLN GTIPSDGKVS PDMLMEQNRG PRIDKMKKQL LVKAYSTRAG
301: NVDVQGNIVI HADEYNRGDF LMDFVNAKFF VIKSYSEDDV HKSIKYNVWS STPNGNKKLN SAYEDAQRIT PGNPRGCPIF LFFSVNASGQ FCGVAEMTGP
401: VDFYKDMDFW QQDKWSGSFP VKWHFIKDVP NPNFRHIILE NNENKPVTNS RDTQEIRYKK GIEMLKVFKD YASRTSLLDD FMYYENRQKL LQEEKAKLLI
501: RSYDNPFAVP ALDPPRKLNS TPGLPSGGSE KISKYSAVPV LDLPLKLNST PGLPSGESEK ISKCSEQQQS GSCMAVPAEL NSIVSKANKE SADNGDKLVA
601: EGGPLVNTAL KIGSLTINPK PLKDKPLDVH STTNTVASTQ SVDVVTVGSM PVKVNGHAES SGFLTIGTIP LDPRAFQLDE ASGSGKKVLK

Best Arabidopsis Sequence Match ( AT1G48110.1 )
(BLAST)

001: MYTSEAAPDF VVDQGMYYPV DASYGYYCTG YESPGDWENH QMFFGVDGSE VQYTGGQNEN SPYICYTPSY GYAQSPYNPF NPYIPGASIG VDSAFVAPQQ
101: FYSIPPYQSV ATSPTFVPYA IQPEIVSNSS TNSLVETGSA NRGRSDGRGS RQRSGTATAG LQRNDPKLPA GNSLGKISEK PRPNSGQSRQ SEMDKSDSTS
201: SSGQARQGRV TSVSAQPVDV VSSSRVSSFR QLDIAPPQLN DFSKIATNNN NIRPKLYGGH ANIIPDTVRE QNRGRRSRAL GNQLIVKAYT TKAGNADAEG
301: NIVINPSQYN KEDLRIDYSN AKFFVIKSYS EDDVHKSIKY NVWSSTLHGN KKLQSAYEDA QRIATEKSCE CPIFLFFSVN ASGLFCGMAE MTGPVSFDKD
401: MDFWQQDKWS GSFPVKWHII KDVPNSYFRH IILQNNENKP VTNSRDTQEI MLKQGLEVLK IFKDHMERTS LLDDFVYYES RQRVMQDERT RLPYRTFLND
501: LPLPRPDLSD RNKKTPLESF KKPSVISAKT EELPSKSEGN EETTVKEGNE EDTSSTQKKI SSLTIDPSGT DSNPTTVSHL NQKSQAKSKP NSSGSLKKTD
601: PSEVVDASLS DKNDSFKVTG SPAILTVGTI PLDPKSLQK

Arabidopsis Description

ECT7evolutionarily conserved C-terminal region 7 [Source:TAIR;Acc:AT1G48110]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.