Factsheet for TraesCS3D01G199400.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G199100.2	Wheat	cytosol	98.11	97.97
TraesCS3B01G232300.2	Wheat	cytosol	97.38	97.53
HORVU3Hr1G045890.2	Barley	endoplasmic reticulum, peroxisome, plasma membrane	82.41	86.7
Os01t0329800-01	Rice	cytosol	65.99	64.12
Zm00001d034996_P005	Maize	cytosol	60.03	60.03
KXG24185	Sorghum	nucleus	62.5	58.66
Zm00001d049729_P008	Maize	cytosol	60.9	58.19
TraesCS1D01G109300.1	Wheat	cytosol	40.7	39.66
KRH36908	Soybean	cytosol	22.24	34.46
CDX93645	Canola	nucleus	24.71	27.78
Bra018708.1-P	Field mustard	nucleus	24.42	27.63
CDY43306	Canola	cytosol	24.56	27.57
AT3G17330.1	Thale cress	nucleus	23.11	26.72
Solyc12g099090.1.1	Tomato	cytosol	26.74	26.67
VIT_05s0020g00460.t01	Wine grape	cytosol	27.47	26.47
AT1G48110.2	Thale cress	nucleus	24.27	26.13
KRH02430	Soybean	cytosol	26.31	26.08
TraesCS5D01G439100.1	Wheat	nucleus	21.95	25.68
PGSC0003DMT400011739	Potato	cytosol	26.02	25.61
KRH50636	Soybean	cytosol	25.0	24.75
KRH11876	Soybean	endoplasmic reticulum	24.27	23.82
TraesCS5D01G396400.3	Wheat	nucleus	22.67	23.57
TraesCS5D01G439200.1	Wheat	cytosol	21.66	23.21
TraesCS4D01G180500.5	Wheat	cytosol, nucleus, plastid	23.55	22.72
TraesCS3D01G267900.1	Wheat	nucleus	22.67	22.67
TraesCS4D01G273200.4	Wheat	cytosol	23.69	22.55
TraesCS7D01G276800.4	Wheat	nucleus	20.35	22.4
TraesCS1D01G045100.1	Wheat	nucleus	20.78	22.27
TraesCS7D01G285000.1	Wheat	endoplasmic reticulum	19.33	21.73
TraesCS2D01G012200.1	Wheat	cytosol	19.91	19.3

Protein Annotations

EnsemblPlants:TraesCS3D01G199400.2	EnsemblPlantsGene:TraesCS3D01G199400	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF26	PFAM:PF04146
PFscan:PS50882	SEG:seg	MapMan:16.5.2.1	:	:	:

Description

No Description!

Coordinates

chr3D:+:225523929..225527439

Molecular Weight (calculated)

75789.4 Da

IEP (calculated)

7.420

GRAVY (calculated)

-0.486

Length

688 amino acids

Sequence
(BLAST)

001: MEMTPELLYG QNVYVPTAVN SYTYGYAVGS PMDWYNHQNS LGYDAQDVYF PAFQTDGTQC VYYATPDNGS VHPSYSPYPM DPGYIVDGSY LPQEYVPDTD
101: PTCQVVPSSY YIPSVLPYAV DSVLGITATS LHPSSVAFIP SMPAYAVTST NHVLPLMALV APKNDVVVNP PVQSTIVSSK QFQNHSMIPI VQLHNSLPMK
201: QELGNGSMVS VKPLHTPQAP TNVLDSPMAA AKHSPKAKLS GNDCFACVGS DPQKWASAEK FQPTSKSSGQ LKAHGSSNAE KHSGQRSPAI VAKSYTSRLI
301: VGNSDGTILI RSDQYNGNDL RVDNPYAKFF VIKSIGEADI HKSIKYGVWS SSSSGNSKLD CAYRDADRIA KRNSTKCPVF LFFSVNGSGH FCGLAEMVGP
401: VDFHKDMDFW CQDKWTGCFP VRWHIIKDVP NYTLQNILLQ NNENKPVTHS RDTQEVPYVP GISVLKILKD IKVKECLFDD FMRYEEDEAR IKQRRWSKLS
501: HNAPDFVPVS QRKSDASDLQ LPKFGGVLID RTLEIQNMSE KPHDCNGIKR QDAVEKQVGI EAGKENGHQE NRCYGKQDNE KAPRSSTSQP QTSTLKMSMD
601: GKQQYWKKVE NPKPNPDGAG HGSSKLNENG VNISSAIVRL EAPEDDSIVA KVGSLTISSK TRKAEDKSPL VDVVTIGSLP IRVNKSVA

Best Arabidopsis Sequence Match ( AT1G48110.1 )
(BLAST)

001: MYTSEAAPDF VVDQGMYYPV DASYGYYCTG YESPGDWENH QMFFGVDGSE VQYTGGQNEN SPYICYTPSY GYAQSPYNPF NPYIPGASIG VDSAFVAPQQ
101: FYSIPPYQSV ATSPTFVPYA IQPEIVSNSS TNSLVETGSA NRGRSDGRGS RQRSGTATAG LQRNDPKLPA GNSLGKISEK PRPNSGQSRQ SEMDKSDSTS
201: SSGQARQGRV TSVSAQPVDV VSSSRVSSFR QLDIAPPQLN DFSKIATNNN NIRPKLYGGH ANIIPDTVRE QNRGRRSRAL GNQLIVKAYT TKAGNADAEG
301: NIVINPSQYN KEDLRIDYSN AKFFVIKSYS EDDVHKSIKY NVWSSTLHGN KKLQSAYEDA QRIATEKSCE CPIFLFFSVN ASGLFCGMAE MTGPVSFDKD
401: MDFWQQDKWS GSFPVKWHII KDVPNSYFRH IILQNNENKP VTNSRDTQEI MLKQGLEVLK IFKDHMERTS LLDDFVYYES RQRVMQDERT RLPYRTFLND
501: LPLPRPDLSD RNKKTPLESF KKPSVISAKT EELPSKSEGN EETTVKEGNE EDTSSTQKKI SSLTIDPSGT DSNPTTVSHL NQKSQAKSKP NSSGSLKKTD
601: PSEVVDASLS DKNDSFKVTG SPAILTVGTI PLDPKSLQK

Arabidopsis Description

ECT7evolutionarily conserved C-terminal region 7 [Source:TAIR;Acc:AT1G48110]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.