Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G431200.1 | Wheat | nucleus | 97.79 | 97.62 |
| TraesCS5B01G433000.1 | Wheat | cytosol | 93.37 | 92.11 |
| HORVU5Hr1G104380.1 | Barley | plastid | 93.03 | 82.75 |
| TraesCS5D01G439200.1 | Wheat | cytosol | 62.93 | 57.63 |
| Os07t0170300-01 | Rice | plasma membrane | 57.31 | 55.98 |
| CDY57677 | Canola | mitochondrion | 15.31 | 52.63 |
| Zm00001d007890_P002 | Maize | mitochondrion | 53.91 | 48.55 |
| Zm00001d018896_P002 | Maize | mitochondrion | 54.93 | 45.75 |
| Bra004105.1-P | Field mustard | nucleus | 29.42 | 43.69 |
| CDY07437 | Canola | nucleus | 30.61 | 42.76 |
| CDY50448 | Canola | cytosol | 18.54 | 42.75 |
| CDY39299 | Canola | nucleus | 30.61 | 42.55 |
| Bra008509.1-P | Field mustard | cytosol | 30.27 | 42.08 |
| CDY56132 | Canola | nucleus | 31.12 | 40.94 |
| CDY52966 | Canola | cytosol | 30.95 | 40.62 |
| CDX91541 | Canola | mitochondrion | 11.22 | 40.49 |
| CDY21154 | Canola | nucleus | 27.55 | 39.8 |
| AT3G03950.3 | Thale cress | cytosol | 28.91 | 39.72 |
| Bra031960.1-P | Field mustard | nucleus | 26.7 | 39.65 |
| Bra036423.1-P | Field mustard | nucleus | 27.21 | 39.41 |
| CDY69959 | Canola | nucleus | 26.7 | 39.35 |
| CDY29972 | Canola | nucleus | 27.38 | 39.27 |
| CDY42891 | Canola | nucleus | 26.7 | 39.25 |
| CDY50867 | Canola | nucleus | 26.7 | 39.25 |
| AT5G61020.1 | Thale cress | cytosol | 32.65 | 38.79 |
| AT1G55500.5 | Thale cress | cytosol | 39.12 | 38.02 |
| CDY43989 | Canola | nucleus | 40.65 | 37.7 |
| TraesCS5D01G396400.3 | Wheat | nucleus | 42.35 | 37.61 |
| CDY23602 | Canola | nucleus | 39.8 | 37.5 |
| VIT_06s0004g00200.t01 | Wine grape | nucleus | 44.9 | 37.45 |
| Bra027432.1-P | Field mustard | nucleus | 40.31 | 37.38 |
| CDY24182 | Canola | nucleus | 34.01 | 36.97 |
| Bra039400.1-P | Field mustard | nucleus | 39.8 | 36.79 |
| CDY07089 | Canola | nucleus | 39.8 | 36.79 |
| AT3G13460.1 | Thale cress | cytosol | 41.67 | 36.73 |
| CDX82538 | Canola | nucleus | 39.63 | 36.41 |
| Solyc01g028860.2.1 | Tomato | nucleus | 43.71 | 36.4 |
| VIT_08s0007g07450.t01 | Wine grape | cytosol | 42.69 | 36.17 |
| Bra001506.1-P | Field mustard | nucleus | 39.29 | 36.15 |
| CDX75712 | Canola | nucleus | 38.95 | 36.12 |
| KRH43005 | Soybean | nucleus | 43.2 | 35.93 |
| KRH59123 | Soybean | nucleus | 42.86 | 35.59 |
| PGSC0003DMT400061684 | Potato | endoplasmic reticulum, plasma membrane | 43.54 | 34.78 |
| Bra014253.1-P | Field mustard | cytosol | 17.52 | 34.56 |
| Bra018951.1-P | Field mustard | cytosol | 15.14 | 34.36 |
| TraesCS4D01G273200.4 | Wheat | cytosol | 41.84 | 34.02 |
| KRH70155 | Soybean | nucleus | 35.54 | 33.17 |
| KRG94807 | Soybean | nucleus | 36.9 | 32.93 |
| KRH06717 | Soybean | nucleus | 36.9 | 32.73 |
| Bra038524.1-P | Field mustard | cytosol | 12.41 | 32.44 |
| TraesCS7D01G276800.4 | Wheat | nucleus | 31.8 | 29.92 |
| TraesCS1D01G045100.1 | Wheat | nucleus | 31.97 | 29.28 |
| TraesCS7D01G285000.1 | Wheat | endoplasmic reticulum | 28.57 | 27.45 |
| TraesCS3D01G267900.1 | Wheat | nucleus | 28.74 | 24.56 |
| TraesCS4D01G180500.5 | Wheat | cytosol, nucleus, plastid | 29.08 | 23.98 |
| TraesCS2D01G012200.1 | Wheat | cytosol | 27.72 | 22.96 |
| TraesCS3D01G199400.2 | Wheat | cytosol | 25.68 | 21.95 |
| TraesCS1D01G109300.1 | Wheat | cytosol | 21.26 | 17.71 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G439100.1 | EnsemblPlantsGene:TraesCS5D01G439100 | Gene3D:3.10.590.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR007275 | InterPro:YTH_domain | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF34 | PFAM:PF04146 |
| PFscan:PS50882 | SEG:seg | MapMan:16.5.2.1 | : | : | : |
Description
No Description!
Coordinates
chr5D:+:492720195..492723799
Molecular Weight (calculated)
63869.7 Da
IEP (calculated)
6.418
GRAVY (calculated)
-0.723
Length
588 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAAAAADQ ATNLLQKLSL DAKAEAIDAP AAKEKASGGL GGKLNGVAAT GKPRAAEQWA NPQDYSDASM YYGAYPAAYY CAGWGDYSMY LNQDGVETPT
101: AGAYGDMYCY PQYGHDGQMY GSQQYQYPSS YHQPQNTATS APKATANSVD EVKGLKKTST PLNPSGNNGS YLNQSSRPAY PWYGGQIYQG KQQKPSSGNP
201: TSTDSNPKSK VQSKNQNTQP LPPLMSLPNS PVASMYAANG MYNSNAYGGF WYGSQFYGPG MYGGWNNLSD GKYKPRGRTA YGSYGFPNEN LDGLNELKRG
301: PRSGLSNNQQ GFGPAAATAV KAQDVSATDG SNAVVQDQYN GSDLADTYEN AKFFIIKSYS EDDVHKSIKY NVWASTPNGN KKLDSTYLEA KSVNSPVFLL
401: FSVNTSGQFV GLAEMVGQVD FDKTVEHWQQ DKWTGCFPVK WHIVKDIPNN LLKHIILEYN ENKPVTNSRD TQEVKLEQGL QVLKIFKDHV SKTSILDDFS
501: FYDNREKIMQ ERKSQRQLQL KKITSPKLLP TVDNTENDSG NVQESQKPEV TGENKSAVED NVEAAAVSGV APKDANPTAA SLAVANGC
101: AGAYGDMYCY PQYGHDGQMY GSQQYQYPSS YHQPQNTATS APKATANSVD EVKGLKKTST PLNPSGNNGS YLNQSSRPAY PWYGGQIYQG KQQKPSSGNP
201: TSTDSNPKSK VQSKNQNTQP LPPLMSLPNS PVASMYAANG MYNSNAYGGF WYGSQFYGPG MYGGWNNLSD GKYKPRGRTA YGSYGFPNEN LDGLNELKRG
301: PRSGLSNNQQ GFGPAAATAV KAQDVSATDG SNAVVQDQYN GSDLADTYEN AKFFIIKSYS EDDVHKSIKY NVWASTPNGN KKLDSTYLEA KSVNSPVFLL
401: FSVNTSGQFV GLAEMVGQVD FDKTVEHWQQ DKWTGCFPVK WHIVKDIPNN LLKHIILEYN ENKPVTNSRD TQEVKLEQGL QVLKIFKDHV SKTSILDDFS
501: FYDNREKIMQ ERKSQRQLQL KKITSPKLLP TVDNTENDSG NVQESQKPEV TGENKSAVED NVEAAAVSGV APKDANPTAA SLAVANGC
001: MSTVAPPADQ AADVLKKLSL DSKSRTLEIP EPTKKTGVYQ YGAMDSNGQV PSFDRSLSPM LPSDALDPSV FYVPNVYQQP YYYGYGSDYT GYTNSESVDM
101: TSGAYGENAS LVYPQGYGYA AFPYSPATSP APQLGGDGQL YGAQQYQYPF PLTASSGPFA SSVPASTQSK LSTNKAANSA SAGIPKGMNG SAPVKPLNQS
201: ALYGNSALGG GLAAGYQDPR YSYDGFYTPV SWHDGSNFSD VQRSVSGSGV ASSYSKANNN VPATRNQNSS SNSHYTSMYQ PASMTGYAAQ GYYDRVSPNK
301: SYGQYGSTVR SGMGYGSSGY GSRTNERGWL NTDNKYRSRG RGNSYFYGNE NIDGLNELNR GPRAKGTKAT EEVSSEEVKK QTFDESNTEE TVTCVLPDRE
401: ECNRDDFPVE YKDAKFFIIK SYSEDDVHKS IKYNVWASTP NGNKKLDAAY QEAQQKSSGC PVFLFFSVNA SGQFIGLAEM KGPVDFNKNI EYWQQDKWTG
501: SFPLKWHILK DVPNSLLKHI TLEYNENKPV TNSRDTQEVK LEQGLKVVKI FKEHNSKTCI LDDFSFYEAR QKTILEKKAK QQQSQKQARE ENGLGRKNQ
101: TSGAYGENAS LVYPQGYGYA AFPYSPATSP APQLGGDGQL YGAQQYQYPF PLTASSGPFA SSVPASTQSK LSTNKAANSA SAGIPKGMNG SAPVKPLNQS
201: ALYGNSALGG GLAAGYQDPR YSYDGFYTPV SWHDGSNFSD VQRSVSGSGV ASSYSKANNN VPATRNQNSS SNSHYTSMYQ PASMTGYAAQ GYYDRVSPNK
301: SYGQYGSTVR SGMGYGSSGY GSRTNERGWL NTDNKYRSRG RGNSYFYGNE NIDGLNELNR GPRAKGTKAT EEVSSEEVKK QTFDESNTEE TVTCVLPDRE
401: ECNRDDFPVE YKDAKFFIIK SYSEDDVHKS IKYNVWASTP NGNKKLDAAY QEAQQKSSGC PVFLFFSVNA SGQFIGLAEM KGPVDFNKNI EYWQQDKWTG
501: SFPLKWHILK DVPNSLLKHI TLEYNENKPV TNSRDTQEVK LEQGLKVVKI FKEHNSKTCI LDDFSFYEAR QKTILEKKAK QQQSQKQARE ENGLGRKNQ
Arabidopsis Description
ECT4evolutionarily conserved C-terminal region 4 [Source:TAIR;Acc:AT1G55500]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.