Skip to main content
crop-pal logo
Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:
  • nucleus 3
  • plasma membrane 6
  • extracellular 4
  • endoplasmic reticulum 5
  • vacuole 4
  • golgi 4
PPI

Inferred distinct locusB in Crop

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc01g028860.2.1 Tomato nucleus 91.98 95.89
VIT_06s0004g00200.t01 Wine grape nucleus 63.72 66.52
KRH43005 Soybean nucleus 59.24 61.67
KRH59123 Soybean nucleus 59.1 61.44
GSMUA_Achr7P01490_001 Banana nucleus 44.7 58.75
AT1G55500.5 Thale cress cytosol 47.96 58.35
GSMUA_Achr4P22630_001 Banana nucleus 48.37 57.33
AT3G13460.1 Thale cress cytosol 51.36 56.67
GSMUA_Achr4P21380_001 Banana nucleus 50.41 56.38
CDX75712 Canola nucleus 48.51 56.31
CDX82538 Canola nucleus 48.78 56.09
Bra001506.1-P Field mustard nucleus 48.64 56.02
CDY43989 Canola nucleus 48.1 55.84
CDY23602 Canola nucleus 47.28 55.77
Bra027432.1-P Field mustard nucleus 47.69 55.36
CDY24182 Canola nucleus 40.62 55.27
CDY07089 Canola nucleus 47.55 55.03
Bra039400.1-P Field mustard nucleus 47.28 54.72
GSMUA_Achr5P02830_001 Banana cytosol 45.52 54.38
GSMUA_Achr7P27220_001 Banana cytosol 48.64 54.16
GSMUA_Achr4P28430_001 Banana nucleus, plastid 44.97 53.82
EER93461 Sorghum nucleus 48.1 53.72
Os03t0748000-01 Rice plasma membrane 48.23 53.71
Zm00001d034005_P003 Maize plasma membrane 46.88 52.27
TraesCS5D01G396400.3 Wheat nucleus 46.06 51.21
TraesCS5B01G391500.1 Wheat nucleus 45.92 51.06
TraesCS5A01G386600.2 Wheat nucleus 45.52 50.53
GSMUA_Achr4P14820_001 Banana cytosol 22.69 50.45
HORVU5Hr1G094950.6 Barley cytosol, nucleus 45.38 50.23
Os03t0158500-01 Rice nucleus 47.55 49.51
KXG40139 Sorghum plastid 46.88 48.52
TraesCS4D01G273200.4 Wheat cytosol 45.24 46.06
TraesCS4A01G031600.2 Wheat cytosol 45.52 45.95
HORVU4Hr1G072940.4 Barley cytosol 45.24 44.88
Zm00001d048424_P003 Maize plastid 45.11 44.86
TraesCS4B01G274500.2 Wheat plastid 46.06 44.2
TraesCS5B01G433000.1 Wheat cytosol 35.6 43.96
TraesCS5D01G439100.1 Wheat nucleus 34.78 43.54
TraesCS5A01G431200.1 Wheat nucleus 34.78 43.46
EER93313 Sorghum cytosol 33.7 43.36
Zm00001d027731_P012 Maize plastid 45.38 41.59
Os07t0170300-01 Rice plasma membrane 33.83 41.36
TraesCS5A01G431100.1 Wheat cytosol 35.05 40.19
KXG34475 Sorghum cytosol 35.05 39.94
HORVU5Hr1G104380.1 Barley plastid 35.6 39.64
TraesCS5D01G439200.1 Wheat cytosol 34.38 39.41
TraesCS5B01G432900.2 Wheat extracellular 34.65 39.35
Zm00001d007890_P002 Maize mitochondrion 33.7 37.98
Zm00001d018896_P002 Maize mitochondrion 34.78 36.26
HORVU5Hr1G104390.3 Barley plastid 33.56 35.9
PGSC0003DMT400064041 Potato cytosol 26.9 34.74
PGSC0003DMT400011739 Potato cytosol 25.82 27.18
Protein Annotations
EntrezGene:102583016MapMan:16.5.2.1Gene3D:3.10.590.10GO:GO:0003674GO:GO:0003676GO:GO:0003723
GO:GO:0005488GO:GO:0005575GO:GO:0016020GO:GO:0016021InterPro:IPR007275UniProt:M1C7V2
PFAM:PF04146EnsemblPlantsGene:PGSC0003DMG400024008PGSC:PGSC0003DMG400024008EnsemblPlants:PGSC0003DMT400061684PFscan:PS50882PANTHER:PTHR12357
PANTHER:PTHR12357:SF63TMHMM:TMhelixUniParc:UPI000294EED8RefSeq:XP_006359197.1InterPro:YTH_domainSEG:seg
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400024008]
Coordinates
chr1:-:18925757..18929531
Molecular Weight (calculated)
80853.2 Da
IEP (calculated)
8.045
GRAVY (calculated)
-0.620
Length
736 amino acids
Sequence
(BLAST)
001: MAAGAPPADR ILTISTFIWL LVTSFGKLWR IFLFFFYCYA VEAADLLQNL SLDSRSKTLE IADAKKKPSG NPTHGANGQV QSTDRSVTPV LPEFMDPNLC
101: YVPNSYTSTA YYYGYDASAN EWEDYARYAN PDGVEMPGVY GDNSSLIYHH AYGYAPYSPY SPATSPVPTV GHDGQLYGSQ QYHYPYFQPL PLTSTSNTTS
201: AALPKGEIAT SAAAADQASL SVDSAKGNSN VVANGGVKGN TGHMPVRPAF QNSSLNANGS YGPGTLPGGA ASGYQDPRLG FDGVHSPIPW IDGSMFTDGQ
301: ARPVANNSFT PSFSNGYAAP STKNQNVHPH VMGMHHPRPS SGVNTTNGYM NRMYPNKYYG QFGNTFNSGM GFGPNRYDTR ATGRGWMTVD NRSKPRGRGN
401: SFYGYGNENM DGLNELNRGP RGKGSKNQKS FTPVALAVKG QNIPLAVTKD AEEVKPSLIP DREQYNHPDF PVTYADAKFF IIKSYSEDDV HKSIKYNVWA
501: STPNGNKKLD AAYQEAQQNS GGCPVFLFFS VNTSGQFVGV AEMVGPVDFN KNVEYWQQDK WVGCFPVKWH IVKDVPNSLL KHITLENNEN KPVTNSRDTQ
601: EVKVEQGLQV LKIFKDHISK QCILDDFEFY EDRQKRIQDK KAKQQLFQKQ SQVWEGKATE EKNRDNSKVD LKSQKPSEVS ACLNKENLPA AAQTTTVEVK
701: LTEIVPVTKS GDDVKDAKPV TISEKKPVAN GASNGC
Best Arabidopsis Sequence Match ( AT3G13460.1 )
(BLAST)
001: MATVAPPADQ ATDLLQKLSL DSPAKASEIP EPNKKTAVYQ YGGVDVHGQV PSYDRSLTPM LPSDAADPSV CYVPNPYNPY QYYNVYGSGQ EWTDYPAYTN
101: PEGVDMNSGI YGENGTVVYP QGYGYAAYPY SPATSPAPQL GGEGQLYGAQ QYQYPNYFPN SGPYASSVAT PTQPDLSANK PAGVKTLPAD SNNVASAAGI
201: TKGSNGSAPV KPTNQATLNT SSNLYGMGAP GGGLAAGYQD PRYAYEGYYA PVPWHDGSKY SDVQRPVSGS GVASSYSKSS TVPSSRNQNY RSNSHYTSVH
301: QPSSVTGYGT AQGYYNRMYQ NKLYGQYGST GRSALGYGSS GYDSRTNGRG WAATDNKYRS WGRGNSYYYG NENNVDGLNE LNRGPRAKGT KNQKGNLDDS
401: LEVKEQTGES NVTEVGEADN TCVVPDREQY NKEDFPVDYA NAMFFIIKSY SEDDVHKSIK YNVWASTPNG NKKLAAAYQE AQQKAGGCPI FLFFSVNASG
501: QFVGLAEMTG PVDFNTNVEY WQQDKWTGSF PLKWHIVKDV PNSLLKHITL ENNENKPVTN SRDTQEVKLE QGLKIVKIFK EHSSKTCILD DFSFYEVRQK
601: TILEKKAKQT QKQVSEEKVT DEKKESATAE SASKESPAAV QTSSDVKVAE NGSVAKPVTG DVVANGC
Arabidopsis Description
ECT2ECT2 [Source:UniProtKB/TrEMBL;Acc:A0A178VBC2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.