Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 3
- plasma membrane 6
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- golgi 4
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
PGSC0003DMT400011724 | |
PGSC0003DMT400069822 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT3G13460.1 | PGSC0003DMT400011724 | AT3G17510.1 | 16113215 |
AT3G13460.1 | PGSC0003DMT400069822 | AT3G17510.1 | 16113215 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc01g028860.2.1 | Tomato | nucleus | 91.98 | 95.89 |
VIT_06s0004g00200.t01 | Wine grape | nucleus | 63.72 | 66.52 |
KRH43005 | Soybean | nucleus | 59.24 | 61.67 |
KRH59123 | Soybean | nucleus | 59.1 | 61.44 |
GSMUA_Achr7P01490_001 | Banana | nucleus | 44.7 | 58.75 |
AT1G55500.5 | Thale cress | cytosol | 47.96 | 58.35 |
GSMUA_Achr4P22630_001 | Banana | nucleus | 48.37 | 57.33 |
AT3G13460.1 | Thale cress | cytosol | 51.36 | 56.67 |
GSMUA_Achr4P21380_001 | Banana | nucleus | 50.41 | 56.38 |
CDX75712 | Canola | nucleus | 48.51 | 56.31 |
CDX82538 | Canola | nucleus | 48.78 | 56.09 |
Bra001506.1-P | Field mustard | nucleus | 48.64 | 56.02 |
CDY43989 | Canola | nucleus | 48.1 | 55.84 |
CDY23602 | Canola | nucleus | 47.28 | 55.77 |
Bra027432.1-P | Field mustard | nucleus | 47.69 | 55.36 |
CDY24182 | Canola | nucleus | 40.62 | 55.27 |
CDY07089 | Canola | nucleus | 47.55 | 55.03 |
Bra039400.1-P | Field mustard | nucleus | 47.28 | 54.72 |
GSMUA_Achr5P02830_001 | Banana | cytosol | 45.52 | 54.38 |
GSMUA_Achr7P27220_001 | Banana | cytosol | 48.64 | 54.16 |
GSMUA_Achr4P28430_001 | Banana | nucleus, plastid | 44.97 | 53.82 |
EER93461 | Sorghum | nucleus | 48.1 | 53.72 |
Os03t0748000-01 | Rice | plasma membrane | 48.23 | 53.71 |
Zm00001d034005_P003 | Maize | plasma membrane | 46.88 | 52.27 |
TraesCS5D01G396400.3 | Wheat | nucleus | 46.06 | 51.21 |
TraesCS5B01G391500.1 | Wheat | nucleus | 45.92 | 51.06 |
TraesCS5A01G386600.2 | Wheat | nucleus | 45.52 | 50.53 |
GSMUA_Achr4P14820_001 | Banana | cytosol | 22.69 | 50.45 |
HORVU5Hr1G094950.6 | Barley | cytosol, nucleus | 45.38 | 50.23 |
Os03t0158500-01 | Rice | nucleus | 47.55 | 49.51 |
KXG40139 | Sorghum | plastid | 46.88 | 48.52 |
TraesCS4D01G273200.4 | Wheat | cytosol | 45.24 | 46.06 |
TraesCS4A01G031600.2 | Wheat | cytosol | 45.52 | 45.95 |
HORVU4Hr1G072940.4 | Barley | cytosol | 45.24 | 44.88 |
Zm00001d048424_P003 | Maize | plastid | 45.11 | 44.86 |
TraesCS4B01G274500.2 | Wheat | plastid | 46.06 | 44.2 |
TraesCS5B01G433000.1 | Wheat | cytosol | 35.6 | 43.96 |
TraesCS5D01G439100.1 | Wheat | nucleus | 34.78 | 43.54 |
TraesCS5A01G431200.1 | Wheat | nucleus | 34.78 | 43.46 |
EER93313 | Sorghum | cytosol | 33.7 | 43.36 |
Zm00001d027731_P012 | Maize | plastid | 45.38 | 41.59 |
Os07t0170300-01 | Rice | plasma membrane | 33.83 | 41.36 |
TraesCS5A01G431100.1 | Wheat | cytosol | 35.05 | 40.19 |
KXG34475 | Sorghum | cytosol | 35.05 | 39.94 |
HORVU5Hr1G104380.1 | Barley | plastid | 35.6 | 39.64 |
TraesCS5D01G439200.1 | Wheat | cytosol | 34.38 | 39.41 |
TraesCS5B01G432900.2 | Wheat | extracellular | 34.65 | 39.35 |
Zm00001d007890_P002 | Maize | mitochondrion | 33.7 | 37.98 |
Zm00001d018896_P002 | Maize | mitochondrion | 34.78 | 36.26 |
HORVU5Hr1G104390.3 | Barley | plastid | 33.56 | 35.9 |
PGSC0003DMT400064041 | Potato | cytosol | 26.9 | 34.74 |
PGSC0003DMT400011739 | Potato | cytosol | 25.82 | 27.18 |
Protein Annotations
EntrezGene:102583016 | MapMan:16.5.2.1 | Gene3D:3.10.590.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
GO:GO:0005488 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR007275 | UniProt:M1C7V2 |
PFAM:PF04146 | EnsemblPlantsGene:PGSC0003DMG400024008 | PGSC:PGSC0003DMG400024008 | EnsemblPlants:PGSC0003DMT400061684 | PFscan:PS50882 | PANTHER:PTHR12357 |
PANTHER:PTHR12357:SF63 | TMHMM:TMhelix | UniParc:UPI000294EED8 | RefSeq:XP_006359197.1 | InterPro:YTH_domain | SEG:seg |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400024008]
Coordinates
chr1:-:18925757..18929531
Molecular Weight (calculated)
80853.2 Da
IEP (calculated)
8.045
GRAVY (calculated)
-0.620
Length
736 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAGAPPADR ILTISTFIWL LVTSFGKLWR IFLFFFYCYA VEAADLLQNL SLDSRSKTLE IADAKKKPSG NPTHGANGQV QSTDRSVTPV LPEFMDPNLC
101: YVPNSYTSTA YYYGYDASAN EWEDYARYAN PDGVEMPGVY GDNSSLIYHH AYGYAPYSPY SPATSPVPTV GHDGQLYGSQ QYHYPYFQPL PLTSTSNTTS
201: AALPKGEIAT SAAAADQASL SVDSAKGNSN VVANGGVKGN TGHMPVRPAF QNSSLNANGS YGPGTLPGGA ASGYQDPRLG FDGVHSPIPW IDGSMFTDGQ
301: ARPVANNSFT PSFSNGYAAP STKNQNVHPH VMGMHHPRPS SGVNTTNGYM NRMYPNKYYG QFGNTFNSGM GFGPNRYDTR ATGRGWMTVD NRSKPRGRGN
401: SFYGYGNENM DGLNELNRGP RGKGSKNQKS FTPVALAVKG QNIPLAVTKD AEEVKPSLIP DREQYNHPDF PVTYADAKFF IIKSYSEDDV HKSIKYNVWA
501: STPNGNKKLD AAYQEAQQNS GGCPVFLFFS VNTSGQFVGV AEMVGPVDFN KNVEYWQQDK WVGCFPVKWH IVKDVPNSLL KHITLENNEN KPVTNSRDTQ
601: EVKVEQGLQV LKIFKDHISK QCILDDFEFY EDRQKRIQDK KAKQQLFQKQ SQVWEGKATE EKNRDNSKVD LKSQKPSEVS ACLNKENLPA AAQTTTVEVK
701: LTEIVPVTKS GDDVKDAKPV TISEKKPVAN GASNGC
101: YVPNSYTSTA YYYGYDASAN EWEDYARYAN PDGVEMPGVY GDNSSLIYHH AYGYAPYSPY SPATSPVPTV GHDGQLYGSQ QYHYPYFQPL PLTSTSNTTS
201: AALPKGEIAT SAAAADQASL SVDSAKGNSN VVANGGVKGN TGHMPVRPAF QNSSLNANGS YGPGTLPGGA ASGYQDPRLG FDGVHSPIPW IDGSMFTDGQ
301: ARPVANNSFT PSFSNGYAAP STKNQNVHPH VMGMHHPRPS SGVNTTNGYM NRMYPNKYYG QFGNTFNSGM GFGPNRYDTR ATGRGWMTVD NRSKPRGRGN
401: SFYGYGNENM DGLNELNRGP RGKGSKNQKS FTPVALAVKG QNIPLAVTKD AEEVKPSLIP DREQYNHPDF PVTYADAKFF IIKSYSEDDV HKSIKYNVWA
501: STPNGNKKLD AAYQEAQQNS GGCPVFLFFS VNTSGQFVGV AEMVGPVDFN KNVEYWQQDK WVGCFPVKWH IVKDVPNSLL KHITLENNEN KPVTNSRDTQ
601: EVKVEQGLQV LKIFKDHISK QCILDDFEFY EDRQKRIQDK KAKQQLFQKQ SQVWEGKATE EKNRDNSKVD LKSQKPSEVS ACLNKENLPA AAQTTTVEVK
701: LTEIVPVTKS GDDVKDAKPV TISEKKPVAN GASNGC
001: MATVAPPADQ ATDLLQKLSL DSPAKASEIP EPNKKTAVYQ YGGVDVHGQV PSYDRSLTPM LPSDAADPSV CYVPNPYNPY QYYNVYGSGQ EWTDYPAYTN
101: PEGVDMNSGI YGENGTVVYP QGYGYAAYPY SPATSPAPQL GGEGQLYGAQ QYQYPNYFPN SGPYASSVAT PTQPDLSANK PAGVKTLPAD SNNVASAAGI
201: TKGSNGSAPV KPTNQATLNT SSNLYGMGAP GGGLAAGYQD PRYAYEGYYA PVPWHDGSKY SDVQRPVSGS GVASSYSKSS TVPSSRNQNY RSNSHYTSVH
301: QPSSVTGYGT AQGYYNRMYQ NKLYGQYGST GRSALGYGSS GYDSRTNGRG WAATDNKYRS WGRGNSYYYG NENNVDGLNE LNRGPRAKGT KNQKGNLDDS
401: LEVKEQTGES NVTEVGEADN TCVVPDREQY NKEDFPVDYA NAMFFIIKSY SEDDVHKSIK YNVWASTPNG NKKLAAAYQE AQQKAGGCPI FLFFSVNASG
501: QFVGLAEMTG PVDFNTNVEY WQQDKWTGSF PLKWHIVKDV PNSLLKHITL ENNENKPVTN SRDTQEVKLE QGLKIVKIFK EHSSKTCILD DFSFYEVRQK
601: TILEKKAKQT QKQVSEEKVT DEKKESATAE SASKESPAAV QTSSDVKVAE NGSVAKPVTG DVVANGC
101: PEGVDMNSGI YGENGTVVYP QGYGYAAYPY SPATSPAPQL GGEGQLYGAQ QYQYPNYFPN SGPYASSVAT PTQPDLSANK PAGVKTLPAD SNNVASAAGI
201: TKGSNGSAPV KPTNQATLNT SSNLYGMGAP GGGLAAGYQD PRYAYEGYYA PVPWHDGSKY SDVQRPVSGS GVASSYSKSS TVPSSRNQNY RSNSHYTSVH
301: QPSSVTGYGT AQGYYNRMYQ NKLYGQYGST GRSALGYGSS GYDSRTNGRG WAATDNKYRS WGRGNSYYYG NENNVDGLNE LNRGPRAKGT KNQKGNLDDS
401: LEVKEQTGES NVTEVGEADN TCVVPDREQY NKEDFPVDYA NAMFFIIKSY SEDDVHKSIK YNVWASTPNG NKKLAAAYQE AQQKAGGCPI FLFFSVNASG
501: QFVGLAEMTG PVDFNTNVEY WQQDKWTGSF PLKWHIVKDV PNSLLKHITL ENNENKPVTN SRDTQEVKLE QGLKIVKIFK EHSSKTCILD DFSFYEVRQK
601: TILEKKAKQT QKQVSEEKVT DEKKESATAE SASKESPAAV QTSSDVKVAE NGSVAKPVTG DVVANGC
Arabidopsis Description
ECT2ECT2 [Source:UniProtKB/TrEMBL;Acc:A0A178VBC2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.