Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plasma membrane 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY57677 | Canola | mitochondrion | 20.54 | 39.77 |
| CDY50448 | Canola | cytosol | 23.87 | 30.98 |
| GSMUA_Achr7P01490_001 | Banana | nucleus | 48.04 | 28.39 |
| CDY42891 | Canola | nucleus | 34.14 | 28.25 |
| CDY50867 | Canola | nucleus | 34.14 | 28.25 |
| CDY21154 | Canola | nucleus | 34.14 | 27.76 |
| Bra036423.1-P | Field mustard | nucleus | 33.84 | 27.59 |
| CDY69959 | Canola | nucleus | 33.23 | 27.57 |
| CDY07437 | Canola | nucleus | 35.05 | 27.55 |
| CDY39299 | Canola | nucleus | 35.05 | 27.42 |
| Bra031960.1-P | Field mustard | nucleus | 32.63 | 27.27 |
| Bra004105.1-P | Field mustard | nucleus | 32.63 | 27.27 |
| CDY29972 | Canola | nucleus | 33.23 | 26.83 |
| CDY56132 | Canola | nucleus | 35.95 | 26.62 |
| CDY52966 | Canola | cytosol | 35.95 | 26.56 |
| Bra008509.1-P | Field mustard | cytosol | 33.84 | 26.48 |
| GSMUA_Achr7P27220_001 | Banana | cytosol | 52.87 | 26.48 |
| CDX91541 | Canola | mitochondrion | 12.99 | 26.38 |
| AT3G03950.3 | Thale cress | cytosol | 33.84 | 26.17 |
| GSMUA_Achr5P02830_001 | Banana | cytosol | 48.64 | 26.14 |
| GSMUA_Achr6P12810_001 | Banana | nucleus | 27.49 | 25.85 |
| EER93461 | Sorghum | nucleus | 51.36 | 25.8 |
| CDY24182 | Canola | nucleus | 41.99 | 25.69 |
| GSMUA_Achr4P22630_001 | Banana | nucleus | 48.04 | 25.6 |
| TraesCS5B01G391500.1 | Wheat | nucleus | 50.76 | 25.38 |
| Zm00001d034005_P003 | Maize | plasma membrane | 50.45 | 25.3 |
| HORVU5Hr1G094950.6 | Barley | cytosol, nucleus | 50.76 | 25.26 |
| TraesCS5D01G396400.3 | Wheat | nucleus | 50.45 | 25.23 |
| TraesCS5A01G386600.2 | Wheat | nucleus | 50.45 | 25.19 |
| GSMUA_Achr4P21380_001 | Banana | nucleus | 49.55 | 24.92 |
| Bra014253.1-P | Field mustard | cytosol | 22.36 | 24.83 |
| GSMUA_Achr1P10560_001 | Banana | nucleus | 33.23 | 24.72 |
| Os03t0748000-01 | Rice | plasma membrane | 48.94 | 24.51 |
| Os03t0158500-01 | Rice | nucleus | 51.96 | 24.33 |
| GSMUA_Achr4P28430_001 | Banana | nucleus, plastid | 44.71 | 24.07 |
| Bra018951.1-P | Field mustard | cytosol | 18.73 | 23.94 |
| VIT_06s0004g00200.t01 | Wine grape | nucleus | 50.76 | 23.83 |
| AT1G55500.5 | Thale cress | cytosol | 43.5 | 23.8 |
| Solyc01g028860.2.1 | Tomato | nucleus | 50.45 | 23.65 |
| VIT_08s0007g07450.t01 | Wine grape | cytosol | 49.55 | 23.63 |
| Bra001506.1-P | Field mustard | nucleus | 45.62 | 23.63 |
| CDX82538 | Canola | nucleus | 45.62 | 23.59 |
| CDY23602 | Canola | nucleus | 44.41 | 23.56 |
| CDX75712 | Canola | nucleus | 45.02 | 23.5 |
| Bra027432.1-P | Field mustard | nucleus | 44.71 | 23.34 |
| CDY43989 | Canola | nucleus | 44.71 | 23.34 |
| KXG40139 | Sorghum | plastid | 49.55 | 23.07 |
| KRH43005 | Soybean | nucleus | 49.24 | 23.06 |
| KRH59123 | Soybean | nucleus | 49.24 | 23.02 |
| PGSC0003DMT400061684 | Potato | endoplasmic reticulum, plasma membrane | 50.45 | 22.69 |
| CDY07089 | Canola | nucleus | 43.5 | 22.64 |
| Bra039400.1-P | Field mustard | nucleus | 43.2 | 22.48 |
| KRG94807 | Soybean | nucleus | 44.71 | 22.46 |
| AT5G61020.1 | Thale cress | cytosol | 33.53 | 22.42 |
| AT3G13460.1 | Thale cress | cytosol | 45.02 | 22.34 |
| KRH06717 | Soybean | nucleus | 44.11 | 22.02 |
| KRH70155 | Soybean | nucleus | 41.09 | 21.59 |
| TraesCS4D01G273200.4 | Wheat | cytosol | 47.13 | 21.58 |
| TraesCS4A01G031600.2 | Wheat | cytosol | 47.43 | 21.54 |
| Zm00001d048424_P003 | Maize | plastid | 47.73 | 21.35 |
| HORVU4Hr1G072940.4 | Barley | cytosol | 47.43 | 21.16 |
| TraesCS4B01G274500.2 | Wheat | plastid | 48.64 | 20.99 |
| Bra038524.1-P | Field mustard | cytosol | 14.2 | 20.89 |
| Zm00001d027731_P012 | Maize | plastid | 49.24 | 20.3 |
| GSMUA_Achr9P06180_001 | Banana | endoplasmic reticulum, plasma membrane | 37.76 | 20.19 |
| GSMUA_Achr6P26690_001 | Banana | cytosol | 35.95 | 19.54 |
| GSMUA_Achr4P11560_001 | Banana | nucleus | 38.07 | 19.41 |
| GSMUA_Achr4P12480_001 | Banana | cytosol | 32.93 | 18.76 |
| GSMUA_Achr4P04600_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 38.37 | 16.47 |
| GSMUA_Achr1P24980_001 | Banana | nucleus | 37.16 | 14.82 |
| GSMUA_Achr8P29890_001 | Banana | cytosol | 33.53 | 13.69 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P14820_001 | EnsemblPlants:GSMUA_Achr4T14820_001 | EnsemblPlantsGene:GSMUA_Achr4G14820_001 | Gene3D:3.10.590.10 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR007275 | InterPro:YTH_domain | ncoils:Coil | PANTHER:PTHR12357 |
| PANTHER:PTHR12357:SF38 | PFAM:PF04146 | PFscan:PS50882 | UniParc:UPI000295F768 | UniProt:M0SNZ7 | MapMan:16.5.2.1 |
Description
YT521-B-like family domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G14820_001]
Coordinates
chr4:-:11140941..11143303
Molecular Weight (calculated)
37179.7 Da
IEP (calculated)
4.853
GRAVY (calculated)
-0.433
Length
331 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEASALLQK LSLDSPPKTH DAVEATAPFL AQQGSSNRES SNMETPSNRS PTPLVSEFAD PNMFYVASGY ASPAYFMIVG YDGSVNEWDL YQGVAYTPYG
101: TYPFNGSSIP AMAHDESTTP RFFEKFAVFN DCFPLITDVC APRISWGFGG SSDDDYADAK LFVIKAYSED DIHKSIKYNV WASTGYGNKK LDAGYQEAQG
201: KAGGCPVLLF FSVNTSGQFV GVAEMDVPNS SILKHITLEN NDNKPVTNSR DAQEVMLEQG LRMLKIFKEH MNNMCVLDDF DFYEKRQNLM QEETRTKQQL
301: LRKQASLLFL KRFDTQPTRQ AYMSELLRWA R
101: TYPFNGSSIP AMAHDESTTP RFFEKFAVFN DCFPLITDVC APRISWGFGG SSDDDYADAK LFVIKAYSED DIHKSIKYNV WASTGYGNKK LDAGYQEAQG
201: KAGGCPVLLF FSVNTSGQFV GVAEMDVPNS SILKHITLEN NDNKPVTNSR DAQEVMLEQG LRMLKIFKEH MNNMCVLDDF DFYEKRQNLM QEETRTKQQL
301: LRKQASLLFL KRFDTQPTRQ AYMSELLRWA R
001: MDSNGQVPSF DRSLSPMLPS DALDPSVFYV PNVYQQPYYY GYGSDYTGYT NSESVDMTSG YGYAAFPYSP ATSPAPQLGG DGQLYGAQQY QYPFPLTASS
101: GPFASSVPAS TQSKLSTNKA ANSASAGIPK GMNGSAPVKP LNQSALYGNS ALGGGLAAGY QDPRYSYDGF YTPVSWHDGS NFSDVQRSVS GSGVASSYSK
201: ANNNVPATRN QNSSSNSHYT SMYQPASMTG YAAQGYYDRV SPNKSYGQYG STVRSGMGYG SSGYGSRTNE RGWLNTDNKY RSRGRGNSYF YGNENIDGLN
301: ELNRGPRAKG TKATEEVSSE EVKKQTFDES NTEETVTCVL PDREECNRDD FPVEYKDAKF FIIKSYSEDD VHKSIKYNVW ASTPNGNKKL DAAYQEAQQK
401: SSGCPVFLFF SVNASGQFIG LAEMKGPVDF NKNIEYWQQD KWTGSFPLKW HILKDVPNSL LKHITLEYNE NKPVTNSRDT QEVKLEQGLK VVKIFKEHNS
501: KTCILDDFSF YEARQKTILE KKAKQQQSQK QVWEGKTNDE KPGTVDSTM
101: GPFASSVPAS TQSKLSTNKA ANSASAGIPK GMNGSAPVKP LNQSALYGNS ALGGGLAAGY QDPRYSYDGF YTPVSWHDGS NFSDVQRSVS GSGVASSYSK
201: ANNNVPATRN QNSSSNSHYT SMYQPASMTG YAAQGYYDRV SPNKSYGQYG STVRSGMGYG SSGYGSRTNE RGWLNTDNKY RSRGRGNSYF YGNENIDGLN
301: ELNRGPRAKG TKATEEVSSE EVKKQTFDES NTEETVTCVL PDREECNRDD FPVEYKDAKF FIIKSYSEDD VHKSIKYNVW ASTPNGNKKL DAAYQEAQQK
401: SSGCPVFLFF SVNASGQFIG LAEMKGPVDF NKNIEYWQQD KWTGSFPLKW HILKDVPNSL LKHITLEYNE NKPVTNSRDT QEVKLEQGLK VVKIFKEHNS
501: KTCILDDFSF YEARQKTILE KKAKQQQSQK QVWEGKTNDE KPGTVDSTM
Arabidopsis Description
ECT4evolutionarily conserved C-terminal region 4 [Source:TAIR;Acc:AT1G55500]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.