Factsheet for GSMUA_Achr4P11560_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P12480_001	Banana	cytosol	60.86	67.99
GSMUA_Achr4P04600_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	74.42	62.65
CDY51902	Canola	cytosol	13.71	57.42
Os08t0556000-01	Rice	nucleus	50.39	52.4
VIT_09s0054g01600.t01	Wine grape	nucleus	51.93	50.6
TraesCS1D01G045100.1	Wheat	nucleus	49.77	50.31
TraesCS1B01G057800.3	Wheat	nucleus	49.46	50.0
TraesCS1A01G044500.1	Wheat	nucleus	49.31	49.84
KXG25412	Sorghum	cytosol	48.84	49.61
HORVU1Hr1G008330.2	Barley	nucleus	49.0	49.53
Bra034710.1-P	Field mustard	nucleus	45.15	49.33
KRH46969	Soybean	endoplasmic reticulum, extracellular	48.84	49.0
KRH44697	Soybean	mitochondrion	49.31	48.63
TraesCS7A01G276800.3	Wheat	nucleus	46.69	48.48
CDY23562	Canola	nucleus	46.23	48.39
TraesCS7D01G276800.4	Wheat	nucleus	46.53	48.32
CDY44025	Canola	nucleus	46.07	48.07
Bra039366.1-P	Field mustard	nucleus	44.38	47.92
Zm00001d031981_P002	Maize	cytosol	47.92	47.77
CDY24224	Canola	nucleus	44.99	47.56
CDY43378	Canola	nucleus	44.84	47.39
TraesCS7B01G174500.1	Wheat	nucleus	43.61	47.25
AT3G13060.2	Thale cress	nucleus	46.07	47.16
VIT_01s0010g03690.t01	Wine grape	cytosol	40.68	46.15
GSMUA_Achr1P10560_001	Banana	nucleus	30.51	44.49
HORVU7Hr1G058250.46	Barley	cytosol, plastid	29.43	40.3
Bra006780.1-P	Field mustard	cytosol	30.2	38.51
AT5G58190.2	Thale cress	nucleus	30.97	38.07
CDY58572	Canola	nucleus	29.74	38.07
GSMUA_Achr4P14820_001	Banana	cytosol	19.41	38.07
CDX88661	Canola	nucleus	29.74	37.84
CDY32718	Canola	nucleus	30.51	37.43
CDY02802	Canola	nucleus	30.66	37.27
Solyc05g032850.2.1	Tomato	nucleus	34.36	36.92
GSMUA_Achr7P01490_001	Banana	nucleus	31.59	36.61
Bra020382.1-P	Field mustard	nucleus	30.66	35.99
GSMUA_Achr6P12810_001	Banana	nucleus	19.41	35.8
GSMUA_Achr4P22630_001	Banana	nucleus	34.21	35.75
CDX90116	Canola	nucleus	28.51	35.51
CDY67303	Canola	nucleus	28.51	35.51
Bra010911.1-P	Field mustard	nucleus	28.35	35.32
GSMUA_Achr4P28430_001	Banana	nucleus, plastid	32.36	34.15
AT1G27960.1	Thale cress	cytosol	28.35	34.14
CDY11758	Canola	nucleus, plastid	28.81	33.75
GSMUA_Achr4P21380_001	Banana	nucleus	34.21	33.74
GSMUA_Achr5P02830_001	Banana	cytosol	30.51	32.14
VIT_11s0065g00160.t01	Wine grape	nucleus	36.36	32.11
GSMUA_Achr7P27220_001	Banana	cytosol	32.67	32.07
GSMUA_Achr6P26690_001	Banana	cytosol	28.2	30.05
GSMUA_Achr9P06180_001	Banana	endoplasmic reticulum, plasma membrane	28.51	29.89
GSMUA_Achr1P24980_001	Banana	nucleus	28.97	22.65
GSMUA_Achr8P29890_001	Banana	cytosol	27.12	21.7

Protein Annotations

EnsemblPlants:GSMUA_Achr4P11560_001	EnsemblPlants:GSMUA_Achr4T11560_001	EnsemblPlantsGene:GSMUA_Achr4G11560_001	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF24
PFAM:PF04146	PFscan:PS50882	UniParc:UPI0002961C76	UniProt:M0SN21	MapMan:16.5.2.1	:

Description

ECT5, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G11560_001]

Coordinates

chr4:-:8317795..8326530

Molecular Weight (calculated)

72630.0 Da

IEP (calculated)

4.875

GRAVY (calculated)

-0.676

Length

649 amino acids

Sequence
(BLAST)

001: METSQQALDR IEPLESSTVD GDQKPVNVET LNEQPPSAID EKVTTSNASD ESSNIGLPRD AQDHFGSSDA VNDDSIIFPP NNLPPPAHVF WYRGYENPIA
101: DEYSRHLNVE GLEVGSTGVY NENRSLVYHT GYGYSPQMPY GPYSPATTPL PSISGDGQLY TPQQFQFPGA YYQQPAPPNM PFLSSPTPIP QADLTMPIDQ
201: QGAFPVDTSS FNTHPFGPRP GYQLSYGSFG RDWLRSPEGT GSVTPLSPPA ASPQPVGALM SFGQNTMPPT YGMASQQHRS LYGFGSSINS PHGGLYHGSI
301: FETSFPSFGF KDQSLIALDR SGRKGTMYSR NGNLDFLNEQ NRGPRASRTN NQMTEHNPSL DNGNSSSRVD KKLYNNPDFI TEYKDAKFFV IKSYSEDNVH
401: KSIKYGVWAS TSNGNKKLDS AYHEANKKED PCPVFLFFSV NASAHFCGVA EMIGPVDFEK SVDYWQQDKW SGQFPVKWQI VKDVPNNLFR HIILENNDNK
501: PVTNSRDTQE VKLEQGLEML SIFKKHEYEV SILDDFEFYE EREKAMQERK SHQHQQQLSN SAWPVPAALR DDQRNTATMS GEFIGQISEK FTHAVTLEER
601: SNADPSTDKN SSLNTAYFVS GTMKKAEMFQ VILGNVIDMF EYFFLLIIT

Best Arabidopsis Sequence Match ( AT3G13060.2 )
(BLAST)

001: MATTQSHTSD LTSEEQPASL DIMKEQTVPA NNETSASFKS SQEAPVVVHP AKVAPLTGPY GLAGDFAGHL PSSILSPQAQ GFYYRGYENP TGEWDEYSSY
101: VNVEGLDITS PVGFNENASL VYQTGYGYNP QMPYGPYSPA ASPLPSEGQL YSPQQFPFSG ASPYYQQVVP PSMQYITSPT QPELTSLVGV DQQGDNIGPR
201: QSYHPHPIGP FNGNQPNLGF PEWQQGFDGG IWSDWSKPSD MHRHSSSISP ALSPQPLGSY GSYGQNIPMG SQRQRSFYGF GSGSNSYNRG YMHSGGRGQG
301: SNYGSRLISN VGMGNQGWIG VDNSRGRGRV SDPSLGGAYN GTFDILNEQN RGPRASKPKT QVLEELDSAA DSKKNNKGSA KEHEESNNAD FVTDYTNAKL
401: FIIKSYSEDN VHKSIKYNVW ASTPNGNKKL DAAYREAKDE KEPCPLFLLF SVNASSQFCG VAEMVGPVDF EKSVDYWQQD KWSGQFPVKW HIIKDVPNSQ
501: FRHIILENND NKPVTNSRDT QEVKLEQGIE MLKIFKNYDA DTSILDDFGF YEEREKIIQD RKARRQPSLP SAGVVAGENE HKPASAALPT DFMKNMSKSF
601: AQVVRLDEGS KEAVKASSSP DAITTAAVSS GQSN

Arabidopsis Description

ECT5Evolutionarily conserved C-terminal region 5 [Source:UniProtKB/TrEMBL;Acc:Q0WR25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.