Factsheet for Bra006780.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plasma membrane 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88661	Canola	nucleus	93.71	93.53
Bra020382.1-P	Field mustard	nucleus	78.78	72.51
AT5G58190.2	Thale cress	nucleus	74.66	71.97
Zm00001d002008_P001	Maize	cytosol	9.43	65.75
Solyc05g032850.2.1	Tomato	nucleus	39.88	33.61
Bra034710.1-P	Field mustard	nucleus	39.1	33.5
GSMUA_Achr1P10560_001	Banana	nucleus	29.08	33.26
Bra039366.1-P	Field mustard	nucleus	38.7	32.78
Bra004105.1-P	Field mustard	nucleus	25.34	32.58
Os08t0556000-01	Rice	nucleus	39.1	31.89
GSMUA_Achr4P12480_001	Banana	cytosol	36.35	31.84
Bra031960.1-P	Field mustard	nucleus	24.75	31.82
TraesCS1B01G057800.3	Wheat	nucleus	39.49	31.31
TraesCS1A01G044500.1	Wheat	nucleus	39.49	31.31
Bra036423.1-P	Field mustard	nucleus	24.75	31.03
TraesCS1D01G045100.1	Wheat	nucleus	39.1	31.0
HORVU1Hr1G008330.2	Barley	nucleus	39.1	31.0
Zm00001d008913_P001	Maize	cytosol, nucleus, peroxisome	24.16	30.83
Bra008406.1-P	Field mustard	cytosol	27.11	30.8
KXG25412	Sorghum	cytosol	38.51	30.67
TraesCS7B01G174500.1	Wheat	nucleus	35.95	30.55
EES14722	Sorghum	nucleus	35.56	30.47
Zm00001d024339_P001	Maize	extracellular	35.36	30.41
TraesCS7A01G276800.3	Wheat	nucleus	37.33	30.4
TraesCS7D01G276800.4	Wheat	nucleus	37.33	30.4
GSMUA_Achr4P11560_001	Banana	nucleus	38.51	30.2
Zm00001d049360_P004	Maize	extracellular	34.58	29.53
Zm00001d031981_P002	Maize	cytosol	37.72	29.49
Bra035104.1-P	Field mustard	cytosol	25.54	29.35
HORVU7Hr1G069070.2	Barley	cytosol	33.99	29.32
TraesCS7B01G182100.2	Wheat	cytosol	33.99	29.22
TraesCS7A01G291700.1	Wheat	cytosol	33.79	29.15
Os08t0224200-01	Rice	mitochondrion	35.36	29.08
Bra008509.1-P	Field mustard	cytosol	23.97	28.84
Os04t0608800-01	Rice	nucleus	32.02	28.7
TraesCS7D01G285000.1	Wheat	endoplasmic reticulum	33.6	27.94
Bra003615.1-P	Field mustard	nucleus	27.7	27.7
KXG27074	Sorghum	cytosol	29.67	27.36
Zm00001d002372_P002	Maize	nucleus	29.67	27.36
VIT_11s0065g00160.t01	Wine grape	nucleus	39.49	27.35
Bra019988.1-P	Field mustard	nucleus	26.72	27.15
Bra014253.1-P	Field mustard	cytosol	15.32	26.17
Bra018951.1-P	Field mustard	cytosol	13.16	25.87
Bra038524.1-P	Field mustard	cytosol	11.39	25.78
Zm00001d047072_P001	Maize	mitochondrion	24.56	25.56
Bra027432.1-P	Field mustard	nucleus	31.83	25.55
HORVU7Hr1G058250.46	Barley	cytosol, plastid	23.77	25.53
GSMUA_Achr4P04600_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	38.11	25.16
Bra010911.1-P	Field mustard	nucleus	25.74	25.14
Bra001506.1-P	Field mustard	nucleus	31.43	25.04
Bra039400.1-P	Field mustard	nucleus	30.65	24.53
Bra018708.1-P	Field mustard	nucleus	27.9	23.36

Protein Annotations

EnsemblPlants:Bra006780.1	EnsemblPlants:Bra006780.1-P	EnsemblPlantsGene:Bra006780	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF56
PFAM:PF04146	PFscan:PS50882	SEG:seg	UniParc:UPI0002540379	UniProt:M4CRD9	MapMan:16.5.2.1

Description

AT5G58190 (E=1e-193) ECT10 | ECT10

Coordinates

chrA03:-:5023451..5025860

Molecular Weight (calculated)

56142.5 Da

IEP (calculated)

5.697

GRAVY (calculated)

-0.708

Length

509 amino acids

Sequence
(BLAST)

001: MDHPASSKKN QHNGTVSSGV KGFVEQQISP GDERIVSSSS STPVTHPLDP SLYYQNPTNL YPYGWNVAHS GYAQGINAWD GYPLYATSPE GLHVPQAVYN
101: EDSSLMYQPG FAYNPYPSMM LEGQIPFSPA YYPQFGMHFS HSEFGVGNDP TSAYMIPFGG YGGGNLSGNQ GANSLTYPQA MGILGPYDHD ASQLPLHGNG
201: ISSSSSLGGY YPVGSYQSPS STASYYGADN PVRLASDIGK RREKEYSSVP TTSDLYGNRG PRSFTRVKSK NGSGLSSSAG DATNDSSTAG PNPSLYNHSE
301: FETDYKNARF FIVKSFSEDN VHRSIKYNVW ASTPHGNKKL DTAYRDAEKM GGKCPIFLFF SVNASGQFCG VAEMVGPVDF EKDAAYWQQG KWNGQFPVKW
401: HIVKDVPNNR FSHILLQNND SKPVTHSRDS QEVKLRQGIE MLRIFKDYEA HTSILDDFSY YDERESQKVG EDGVTKEETF AVEQLSERLQ AVTVEDGKEG
501: EKEDLKEKT

Best Arabidopsis Sequence Match ( AT5G58190.2 )
(BLAST)

001: MDPASSSSSN QRNRIVSSGE RPVMADNGVQ QQVSHDDGRN IVSSSYSSSV VPSPDPAPYY NVLQTPTNLY HYDWDIANSG YAQGINTWDG YPRYATTTPE
101: AMHVPPVVYN DNSSLMYQYP GYGFNPYPSV MLEGQIPVSP AYYPQPFGAP SAMHYLPSDI DPTSAAYMIP YGQYGGGNYS GNQGDISLTS HIPYPQTMGI
201: LGPYDHNASQ VALHGSGVAS SSSLGGYYHV GSYQNPSSTP SYYGVDNRVR LTPDIGKRRE KDQGSISSTS DLYGNRGPRA SSRVKSKNSS KPCSTIGDSA
301: SDSSTAGPNP SLYNHPEFVT DYKNAKFFIV KSFSEDNVHR SIKYNVWAST PHGNKKLDTA YRDAEKMGGK CPIFLFFSVN ASGQFCGVSE MVGPVDFEKD
401: AGYWQQDRWS GQFPVKWHIV KDIPNNRFCH ILLQNNDNKP VTHSRDSQEV KLRQGIEMLR IFKEYEAHTS ILDDFGYYDE LEGQKVGEDG TRKKAGEEET
501: SVEQLSERLQ AVKVEDGKEE EKKELIAD

Arabidopsis Description

ECT10Evolutionarily conserved C-terminal region 10 [Source:UniProtKB/TrEMBL;Acc:F4KDJ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.