CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 1
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002008_P001	Maize	cytosol	11.62	94.52
Zm00001d024339_P001	Maize	extracellular	91.41	91.72
Zm00001d049360_P004	Maize	extracellular	91.08	90.77
Os08t0224200-01	Rice	mitochondrion	78.62	75.44
TraesCS7A01G291700.1	Wheat	cytosol	72.9	73.39
TraesCS7B01G182100.2	Wheat	cytosol	72.56	72.8
HORVU7Hr1G069070.2	Barley	cytosol	72.05	72.54
TraesCS7D01G285000.1	Wheat	endoplasmic reticulum	70.2	68.14
Zm00001d008913_P001	Maize	cytosol, nucleus, peroxisome	37.04	55.14
CDY51902	Canola	cytosol	14.14	54.19
KXG27074	Sorghum	cytosol	45.29	48.73
Zm00001d047072_P001	Maize	mitochondrion	37.71	45.81
KXG25412	Sorghum	cytosol	46.8	43.51
VIT_09s0054g01600.t01	Wine grape	nucleus	48.15	42.94
Bra034710.1-P	Field mustard	nucleus	42.59	42.59
CDY23562	Canola	nucleus	44.28	42.42
CDY44025	Canola	nucleus	44.28	42.28
CDY24224	Canola	nucleus	43.6	42.18
Bra039366.1-P	Field mustard	nucleus	42.42	41.93
CDY43378	Canola	nucleus	43.27	41.86
AT3G13060.2	Thale cress	nucleus	44.44	41.64
KRH46969	Soybean	endoplasmic reticulum, extracellular	45.29	41.58
KRH44697	Soybean	mitochondrion	45.79	41.34
VIT_01s0010g03690.t01	Wine grape	cytosol	38.22	39.69
GSMUA_Achr1P10560_001	Banana	nucleus	29.29	39.1
AT5G58190.2	Thale cress	nucleus	31.82	35.8
Bra006780.1-P	Field mustard	cytosol	30.47	35.56
CDY32718	Canola	nucleus	31.48	35.35
CDX88661	Canola	nucleus	30.3	35.29
CDY02802	Canola	nucleus	31.48	35.02
CDY58572	Canola	nucleus	29.63	34.71
Solyc05g032850.2.1	Tomato	nucleus	35.19	34.6
Bra020382.1-P	Field mustard	nucleus	31.65	34.0
EER93313	Sorghum	cytosol	30.81	31.99
VIT_11s0065g00160.t01	Wine grape	nucleus	39.39	31.84
EER93461	Sorghum	nucleus	34.85	31.41
AT1G27960.1	Thale cress	cytosol	26.94	29.68
CDX90116	Canola	nucleus	25.93	29.56
CDY67303	Canola	nucleus	25.93	29.56
Bra010911.1-P	Field mustard	nucleus	25.93	29.56
CDY11758	Canola	nucleus, plastid	26.94	28.88
KXG40139	Sorghum	plastid	33.33	27.85
KXG34475	Sorghum	cytosol	30.13	27.71
OQU87332	Sorghum	mitochondrion, nucleus	29.63	26.23
KXG21015	Sorghum	nucleus	26.43	24.04
KXG24185	Sorghum	nucleus	23.06	18.69
OQU77486	Sorghum	cytosol	21.72	18.22

Protein Annotations

EnsemblPlants:EES14722	EnsemblPlantsGene:SORBI_3007G078600	EntrezGene:8072165	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF64
PFAM:PF04146	PFscan:PS50882	ProteinID:EES14722	ProteinID:EES14722.1	RefSeq:XP_002445227.1	SEG:seg
unigene:Sbi.14179	UniParc:UPI0001A87E4D	UniProt:C5YIX6	MapMan:16.5.2.1	:	:

Description

hypothetical protein

Coordinates

chr7:-:9201830..9206035

Molecular Weight (calculated)

65059.1 Da

IEP (calculated)

5.469

GRAVY (calculated)

-0.770

Length

594 amino acids

Sequence
(BLAST)

001: MAAAPHQTGP AADSMIPLQS EPVLENNPSK SANAKDQILS GAENVSAGNA RGASSLKSPK GPPEKPSSVG KAGEQPFVYQ QNVYAPQPQP LYPGGYMNPS
101: GQWEEYPHYV NMEGLHSVSP GIYNDNQSLM LSPGYASNPQ MMYGAYSPVS TVGDGQQYFP VHYPFSSPYY QPPASPSMGY SSSATGISQG DPMLQQEYFL
201: PDGLLYSPTP GYHHPFSSFD RAPTQPNNAP GLFGQGNLPL ASGMHHGSMY GPGSYKGRQQ GSKFGGTTPS WSSAGRRFGT FDLSGNQQRG SMPFGSHNGS
301: LEFMNEQNRG PRATKPKTQD TENSSDEKNE KTVPLIDSEL YNRSDFITEY KDAKFFVIKS YTEDHVHRSI KYNVWASTAS GNRKLDSAYR AAKEKEEHCP
401: IFLFFSVNGS GQFCGVAEMI GPVDFDRSVD YWQQDKWSGQ FPVKWHIIKD VPNNLLRHII LENNDNKPVT NSRDTQEVKL EQGLQMLTIF KSHEAETTIL
501: EDFDFYEQRE KALQENRRQQ QPASTDPQKL VDTKAQGPVA DISDAFAKAV QLKDIENSGT TPKAEGASAE NGSAATAKVE GSADLNMGPA EESS

Best Arabidopsis Sequence Match ( AT3G13060.2 )
(BLAST)

001: MATTQSHTSD LTSEEQPASL DIMKEQTVPA NNETSASFKS SQEAPVVVHP AKVAPLTGPY GLAGDFAGHL PSSILSPQAQ GFYYRGYENP TGEWDEYSSY
101: VNVEGLDITS PVGFNENASL VYQTGYGYNP QMPYGPYSPA ASPLPSEGQL YSPQQFPFSG ASPYYQQVVP PSMQYITSPT QPELTSLVGV DQQGDNIGPR
201: QSYHPHPIGP FNGNQPNLGF PEWQQGFDGG IWSDWSKPSD MHRHSSSISP ALSPQPLGSY GSYGQNIPMG SQRQRSFYGF GSGSNSYNRG YMHSGGRGQG
301: SNYGSRLISN VGMGNQGWIG VDNSRGRGRV SDPSLGGAYN GTFDILNEQN RGPRASKPKT QVLEELDSAA DSKKNNKGSA KEHEESNNAD FVTDYTNAKL
401: FIIKSYSEDN VHKSIKYNVW ASTPNGNKKL DAAYREAKDE KEPCPLFLLF SVNASSQFCG VAEMVGPVDF EKSVDYWQQD KWSGQFPVKW HIIKDVPNSQ
501: FRHIILENND NKPVTNSRDT QEVKLEQGIE MLKIFKNYDA DTSILDDFGF YEEREKIIQD RKARRQPSLP SAGVVAGENE HKPASAALPT DFMKNMSKSF
601: AQVVRLDEGS KEAVKASSSP DAITTAAVSS GQSN

Arabidopsis Description

ECT5Evolutionarily conserved C-terminal region 5 [Source:UniProtKB/TrEMBL;Acc:Q0WR25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.