Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88661 | Canola | nucleus | 91.91 | 91.37 |
| CDY32718 | Canola | nucleus | 79.68 | 76.37 |
| CDY02802 | Canola | nucleus | 79.68 | 75.66 |
| AT5G58190.2 | Thale cress | nucleus | 75.54 | 72.54 |
| Zm00001d002008_P001 | Maize | cytosol | 9.66 | 67.12 |
| CDY51902 | Canola | cytosol | 13.41 | 43.87 |
| CDY57677 | Canola | mitochondrion | 13.21 | 39.18 |
| CDY50448 | Canola | cytosol | 17.55 | 34.9 |
| Solyc05g032850.2.1 | Tomato | nucleus | 39.65 | 33.28 |
| GSMUA_Achr1P10560_001 | Banana | nucleus | 29.19 | 33.26 |
| CDY69959 | Canola | nucleus | 26.04 | 33.08 |
| CDY50867 | Canola | nucleus | 25.44 | 32.25 |
| CDY42891 | Canola | nucleus | 25.44 | 32.25 |
| CDY44025 | Canola | nucleus | 38.66 | 31.51 |
| CDY23562 | Canola | nucleus | 38.46 | 31.45 |
| CDY24224 | Canola | nucleus | 38.07 | 31.43 |
| CDY43378 | Canola | nucleus | 38.07 | 31.43 |
| Os08t0556000-01 | Rice | nucleus | 38.66 | 31.41 |
| GSMUA_Achr4P12480_001 | Banana | cytosol | 35.9 | 31.33 |
| CDY22270 | Canola | cytosol | 27.61 | 31.25 |
| CDY56809 | Canola | cytosol | 27.61 | 31.25 |
| CDY39299 | Canola | nucleus | 26.04 | 31.21 |
| CDY07437 | Canola | nucleus | 25.84 | 31.12 |
| CDY21154 | Canola | nucleus | 24.85 | 30.96 |
| CDY29972 | Canola | nucleus | 24.85 | 30.73 |
| TraesCS1A01G044500.1 | Wheat | nucleus | 38.86 | 30.69 |
| TraesCS1B01G057800.3 | Wheat | nucleus | 38.86 | 30.69 |
| CDX91541 | Canola | mitochondrion | 9.86 | 30.67 |
| HORVU1Hr1G008330.2 | Barley | nucleus | 38.46 | 30.37 |
| TraesCS1D01G045100.1 | Wheat | nucleus | 38.46 | 30.37 |
| Zm00001d008913_P001 | Maize | cytosol, nucleus, peroxisome | 23.87 | 30.33 |
| KXG25412 | Sorghum | cytosol | 38.07 | 30.2 |
| CDX87395 | Canola | cytosol | 26.43 | 30.18 |
| TraesCS7B01G174500.1 | Wheat | nucleus | 35.5 | 30.05 |
| CDX88524 | Canola | cytosol | 26.04 | 29.86 |
| TraesCS7A01G276800.3 | Wheat | nucleus | 36.69 | 29.76 |
| TraesCS7D01G276800.4 | Wheat | nucleus | 36.69 | 29.76 |
| GSMUA_Achr4P11560_001 | Banana | nucleus | 38.07 | 29.74 |
| EES14722 | Sorghum | nucleus | 34.71 | 29.63 |
| Zm00001d024339_P001 | Maize | extracellular | 34.12 | 29.22 |
| Zm00001d031981_P002 | Maize | cytosol | 37.48 | 29.19 |
| HORVU7Hr1G069070.2 | Barley | cytosol | 33.73 | 28.98 |
| TraesCS7B01G182100.2 | Wheat | cytosol | 33.73 | 28.89 |
| TraesCS7A01G291700.1 | Wheat | cytosol | 33.53 | 28.81 |
| Zm00001d049360_P004 | Maize | extracellular | 33.53 | 28.52 |
| Os04t0608800-01 | Rice | nucleus | 31.95 | 28.52 |
| CDX68000 | Canola | nucleus | 28.4 | 28.29 |
| Os08t0224200-01 | Rice | mitochondrion | 34.52 | 28.27 |
| CDY05744 | Canola | cytosol | 6.9 | 27.78 |
| KXG27074 | Sorghum | cytosol | 30.18 | 27.72 |
| CDX79309 | Canola | nucleus | 27.81 | 27.7 |
| TraesCS7D01G285000.1 | Wheat | endoplasmic reticulum | 33.33 | 27.61 |
| Zm00001d002372_P002 | Maize | nucleus | 29.98 | 27.54 |
| CDY56132 | Canola | nucleus | 24.26 | 27.52 |
| VIT_11s0065g00160.t01 | Wine grape | nucleus | 39.45 | 27.21 |
| CDY52966 | Canola | cytosol | 23.87 | 27.01 |
| CDX94944 | Canola | nucleus | 26.43 | 26.96 |
| CDX93476 | Canola | nucleus | 26.43 | 26.8 |
| CDY24182 | Canola | nucleus | 27.81 | 26.06 |
| Zm00001d047072_P001 | Maize | mitochondrion | 24.46 | 25.36 |
| CDY23602 | Canola | nucleus | 31.16 | 25.32 |
| CDY43989 | Canola | nucleus | 31.36 | 25.08 |
| GSMUA_Achr4P04600_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 37.87 | 24.9 |
| HORVU7Hr1G058250.46 | Barley | cytosol, plastid | 23.27 | 24.89 |
| CDX90116 | Canola | nucleus | 25.44 | 24.76 |
| CDY67303 | Canola | nucleus | 25.44 | 24.76 |
| CDX82538 | Canola | nucleus | 30.77 | 24.38 |
| CDY07089 | Canola | nucleus | 30.37 | 24.21 |
| CDX75712 | Canola | nucleus | 30.18 | 24.13 |
| CDY43306 | Canola | cytosol | 28.8 | 23.82 |
| CDY60520 | Canola | cytosol | 6.11 | 23.48 |
| CDY11758 | Canola | nucleus, plastid | 25.64 | 23.47 |
| CDX93645 | Canola | nucleus | 27.22 | 22.55 |
Protein Annotations
| EnsemblPlants:CDY58572 | EnsemblPlantsGene:GSBRNA2T00024855001 | Gene3D:3.10.590.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR007275 | InterPro:YTH_domain | ncoils:Coil | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF56 |
| PFAM:PF04146 | PFscan:PS50882 | ProteinID:CDY58572 | ProteinID:CDY58572.1 | SEG:seg | UniParc:UPI0004EEF891 |
| UniProt:A0A078J611 | MapMan:16.5.2.1 | : | : | : | : |
Description
BnaC03g12510DBnaC03g12510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J611]
Coordinates
chrLK033679:-:33037..35638
Molecular Weight (calculated)
55921.3 Da
IEP (calculated)
5.718
GRAVY (calculated)
-0.687
Length
507 amino acids
Sequence
(BLAST)
(BLAST)
001: MADPASSRNQ RNRIVSYGVK GFVEQQISPG DELIVSSSST SVTHPPDPSL YHQNPTNLYP YGCNVAHSGY AQGINTWDGY PLYATSPEGL HIPQVVYSED
101: SSLMYQPGFA YNPYPSMMLE SQIPISPAYY PQFGMHFSHS EFGGGSDPTS AYMIPFGGYG GGNLSGNQGD NSLTYPQAMG ILGPYDHNAS QLPLHGNGVA
201: SSSSLGGYYP VGSYQSPSSI ASYYGADNPV RLASDIGKRR EKEYSSVPTT SDLYGNRGPR SFTRVKSKNG SGLSSSAGDA TNDSSTAGSN PSLYNHPEFA
301: TDYKNARFFI VKSFSEDNVH RSIKYNVWAS TPHGSKKLDT AYRDAEKMGG KCPIFLFFSV NASGQFCGVA EMVGPVDFEK DAAYWQQGKW NGQFPVKWHI
401: VKDVPNNRFS HILLQNNDNK PVTHSRDSQE VKLRQGIEML RISKEYEAHT SILDDFSYYD ERESEKVGED GVRKEETSAV EQLSERLQAV SVEDGKEWEK
501: EDLKEKT
101: SSLMYQPGFA YNPYPSMMLE SQIPISPAYY PQFGMHFSHS EFGGGSDPTS AYMIPFGGYG GGNLSGNQGD NSLTYPQAMG ILGPYDHNAS QLPLHGNGVA
201: SSSSLGGYYP VGSYQSPSSI ASYYGADNPV RLASDIGKRR EKEYSSVPTT SDLYGNRGPR SFTRVKSKNG SGLSSSAGDA TNDSSTAGSN PSLYNHPEFA
301: TDYKNARFFI VKSFSEDNVH RSIKYNVWAS TPHGSKKLDT AYRDAEKMGG KCPIFLFFSV NASGQFCGVA EMVGPVDFEK DAAYWQQGKW NGQFPVKWHI
401: VKDVPNNRFS HILLQNNDNK PVTHSRDSQE VKLRQGIEML RISKEYEAHT SILDDFSYYD ERESEKVGED GVRKEETSAV EQLSERLQAV SVEDGKEWEK
501: EDLKEKT
001: MDPASSSSSN QRNRIVSSGE RPVMADNGVQ QQVSHDDGRN IVSSSYSSSV VPSPDPAPYY NVLQTPTNLY HYDWDIANSG YAQGINTWDG YPRYATTTPE
101: AMHVPPVVYN DNSSLMYQYP GYGFNPYPSV MLEGQIPVSP AYYPQPFGAP SAMHYLPSDI DPTSAAYMIP YGQYGGGNYS GNQGDISLTS HIPYPQTMGI
201: LGPYDHNASQ VALHGSGVAS SSSLGGYYHV GSYQNPSSTP SYYGVDNRVR LTPDIGKRRE KDQGSISSTS DLYGNRGPRA SSRVKSKNSS KPCSTIGDSA
301: SDSSTAGPNP SLYNHPEFVT DYKNAKFFIV KSFSEDNVHR SIKYNVWAST PHGNKKLDTA YRDAEKMGGK CPIFLFFSVN ASGQFCGVSE MVGPVDFEKD
401: AGYWQQDRWS GQFPVKWHIV KDIPNNRFCH ILLQNNDNKP VTHSRDSQEV KLRQGIEMLR IFKEYEAHTS ILDDFGYYDE LEGQKVGEDG TRKKAGEEET
501: SVEQLSERLQ AVKVEDGKEE EKKELIAD
101: AMHVPPVVYN DNSSLMYQYP GYGFNPYPSV MLEGQIPVSP AYYPQPFGAP SAMHYLPSDI DPTSAAYMIP YGQYGGGNYS GNQGDISLTS HIPYPQTMGI
201: LGPYDHNASQ VALHGSGVAS SSSLGGYYHV GSYQNPSSTP SYYGVDNRVR LTPDIGKRRE KDQGSISSTS DLYGNRGPRA SSRVKSKNSS KPCSTIGDSA
301: SDSSTAGPNP SLYNHPEFVT DYKNAKFFIV KSFSEDNVHR SIKYNVWAST PHGNKKLDTA YRDAEKMGGK CPIFLFFSVN ASGQFCGVSE MVGPVDFEKD
401: AGYWQQDRWS GQFPVKWHIV KDIPNNRFCH ILLQNNDNKP VTHSRDSQEV KLRQGIEMLR IFKEYEAHTS ILDDFGYYDE LEGQKVGEDG TRKKAGEEET
501: SVEQLSERLQ AVKVEDGKEE EKKELIAD
Arabidopsis Description
ECT10Evolutionarily conserved C-terminal region 10 [Source:UniProtKB/TrEMBL;Acc:F4KDJ9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.