Factsheet for Solyc05g032850.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002008_P001	Maize	cytosol	8.11	67.12
AT5G58190.2	Thale cress	nucleus	36.42	41.67
CDY02802	Canola	nucleus	35.43	40.07
CDY32718	Canola	nucleus	34.93	39.89
Bra006780.1-P	Field mustard	cytosol	33.61	39.88
CDX88661	Canola	nucleus	33.61	39.8
CDY58572	Canola	nucleus	33.28	39.65
Bra020382.1-P	Field mustard	nucleus	35.1	38.34
Os04t0608800-01	Rice	nucleus	34.27	36.44
Os08t0556000-01	Rice	nucleus	36.76	35.58
KXG25412	Sorghum	cytosol	37.58	35.52
EES14722	Sorghum	nucleus	34.6	35.19
Zm00001d024339_P001	Maize	extracellular	34.44	35.14
GSMUA_Achr4P12480_001	Banana	cytosol	33.44	34.77
TraesCS1D01G045100.1	Wheat	nucleus	36.92	34.74
TraesCS7A01G291700.1	Wheat	cytosol	33.77	34.58
HORVU1Hr1G008330.2	Barley	nucleus	36.59	34.42
TraesCS1A01G044500.1	Wheat	nucleus	36.59	34.42
VIT_11s0065g00160.t01	Wine grape	nucleus	41.89	34.42
TraesCS7D01G276800.4	Wheat	nucleus	35.6	34.4
TraesCS7A01G276800.3	Wheat	nucleus	35.6	34.4
Zm00001d049360_P004	Maize	extracellular	33.94	34.4
GSMUA_Achr4P11560_001	Banana	nucleus	36.92	34.36
TraesCS7B01G182100.2	Wheat	cytosol	33.61	34.29
TraesCS1B01G057800.3	Wheat	nucleus	36.42	34.27
Zm00001d008913_P001	Maize	cytosol, nucleus, peroxisome	22.52	34.09
HORVU7Hr1G069070.2	Barley	cytosol	33.28	34.07
KXG27074	Sorghum	cytosol	31.13	34.06
Os08t0224200-01	Rice	mitochondrion	34.77	33.93
TraesCS7B01G174500.1	Wheat	nucleus	33.28	33.56
GSMUA_Achr1P10560_001	Banana	nucleus	24.67	33.48
Zm00001d031981_P002	Maize	cytosol	35.93	33.33
TraesCS7D01G285000.1	Wheat	endoplasmic reticulum	33.44	33.01
Zm00001d002372_P002	Maize	nucleus	29.3	32.07
HORVU7Hr1G058250.46	Barley	cytosol, plastid	24.34	31.01
Zm00001d047072_P001	Maize	mitochondrion	24.17	29.86
GSMUA_Achr4P04600_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	37.91	29.7
Solyc01g103540.2.1	Tomato	nucleus	26.32	28.65
Solyc01g028860.2.1	Tomato	nucleus	32.28	27.62
Solyc12g099090.1.1	Tomato	cytosol	25.83	22.61

Protein Annotations

EnsemblPlants:Solyc05g032850.2.1	EnsemblPlantsGene:Solyc05g032850.2	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF62
PFAM:PF04146	PFscan:PS50882	SEG:seg	UniParc:UPI00027660CA	UniProt:K4C066	MapMan:16.5.2.1

Description

No Description!

Coordinates

chr5:-:43986183..43996430

Molecular Weight (calculated)

65974.4 Da

IEP (calculated)

5.235

GRAVY (calculated)

-0.616

Length

604 amino acids

Sequence
(BLAST)

001: MEDTNQQSID PFTSVSSSGE RVEEPHNVAE QPISPKDERI GSANASPDGA IPGASRNVQD HPVTSEAGAI PTFYPLNSYS PQDPGLYYGG YDNGTGSWVE
101: QSNDGNVNNL HVAPPGMFNE NPLFFPPGYG FDPQMAFGQF SPIASPLSPF MIDGQLYSHQ IPVSPPYYAP PVSPGLPHVT SALPASQPDL VAPGSTGHEI
201: DGTHFGPGSG YYIPVGPFGG GELSGSSNMG FYNYQGEVGS GQSLPNLANP VDSGRYISQM TSARLYPPPV GILGSYEQNA MQASHQGLGF TPGSLSRKYS
301: QHSLYPSANY GSGSSSLWEP GHRNWLTPDR GGRRERDRHS VNISTESLGM ASERNRGPRA LKPKSKASIE DSSSSVICRE VELTSILQPG QYNRPEFVTD
401: YEHAKFFVIK SFSEDNVHKS IKYGVWASTP QGNRKLDAAY AEAKEMNANC PVFLFFSVNA SGQFCGVAEM VGPIDFENSA EYWQQDRWSG KFPVKWHVIK
501: DVPNSQFRHI LLEHNDNKPV THSRDSQEVK LPEGLEMLKI FKNYETDTSL LDDFTYYDER EKSLLEKKSK QRPLPPGSAA ADTISQLADS LAGTLNLEGN
601: KKLP

Best Arabidopsis Sequence Match ( AT3G13060.2 )
(BLAST)

001: MATTQSHTSD LTSEEQPASL DIMKEQTVPA NNETSASFKS SQEAPVVVHP AKVAPLTGPY GLAGDFAGHL PSSILSPQAQ GFYYRGYENP TGEWDEYSSY
101: VNVEGLDITS PVGFNENASL VYQTGYGYNP QMPYGPYSPA ASPLPSEGQL YSPQQFPFSG ASPYYQQVVP PSMQYITSPT QPELTSLVGV DQQGDNIGPR
201: QSYHPHPIGP FNGNQPNLGF PEWQQGFDGG IWSDWSKPSD MHRHSSSISP ALSPQPLGSY GSYGQNIPMG SQRQRSFYGF GSGSNSYNRG YMHSGGRGQG
301: SNYGSRLISN VGMGNQGWIG VDNSRGRGRV SDPSLGGAYN GTFDILNEQN RGPRASKPKT QVLEELDSAA DSKKNNKGSA KEHEESNNAD FVTDYTNAKL
401: FIIKSYSEDN VHKSIKYNVW ASTPNGNKKL DAAYREAKDE KEPCPLFLLF SVNASSQFCG VAEMVGPVDF EKSVDYWQQD KWSGQFPVKW HIIKDVPNSQ
501: FRHIILENND NKPVTNSRDT QEVKLEQGIE MLKIFKNYDA DTSILDDFGF YEEREKIIQD RKARRQPSLP SAGVVAGENE HKPASAALPT DFMKNMSKSF
601: AQVVRLDEGS KEAVKASSSP DAITTAAVSS GQSN

Arabidopsis Description

ECT5Evolutionarily conserved C-terminal region 5 [Source:UniProtKB/TrEMBL;Acc:Q0WR25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.