Factsheet for Os04t0608800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 1
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0224200-01	Rice	mitochondrion	67.08	61.55
CDY51902	Canola	cytosol	14.79	54.19
KXG27074	Sorghum	cytosol	50.0	51.45
Zm00001d002372_P002	Maize	nucleus	48.06	49.46
Os08t0556000-01	Rice	nucleus	45.25	41.19
VIT_09s0054g01600.t01	Wine grape	nucleus	44.72	38.14
GSMUA_Achr1P10560_001	Banana	nucleus	29.23	37.3
KRH46969	Soybean	endoplasmic reticulum, extracellular	42.25	37.09
Bra034710.1-P	Field mustard	nucleus	38.56	36.87
KRH44697	Soybean	mitochondrion	42.61	36.78
CDY23562	Canola	nucleus	40.14	36.77
AT3G13060.2	Thale cress	nucleus	40.85	36.59
CDY44025	Canola	nucleus	39.96	36.5
Bra039366.1-P	Field mustard	nucleus	38.56	36.44
CDY24224	Canola	nucleus	39.26	36.32
CDY43378	Canola	nucleus	39.08	36.16
VIT_01s0010g03690.t01	Wine grape	cytosol	36.27	36.01
Solyc05g032850.2.1	Tomato	nucleus	36.44	34.27
Bra006780.1-P	Field mustard	cytosol	28.7	32.02
CDX88661	Canola	nucleus	28.7	31.96
CDY58572	Canola	nucleus	28.52	31.95
CDY32718	Canola	nucleus	29.75	31.95
CDY02802	Canola	nucleus	29.93	31.84
AT5G58190.2	Thale cress	nucleus	29.58	31.82
Bra020382.1-P	Field mustard	nucleus	29.75	30.56
VIT_11s0065g00160.t01	Wine grape	nucleus	37.85	29.25
Os03t0748000-01	Rice	plasma membrane	33.98	29.2
Os07t0170300-01	Rice	plasma membrane	30.63	28.9
AT1G27960.1	Thale cress	cytosol	27.29	28.76
Bra010911.1-P	Field mustard	nucleus	26.23	28.6
CDX90116	Canola	nucleus	26.23	28.6
CDY67303	Canola	nucleus	26.23	28.6
CDY11758	Canola	nucleus, plastid	26.94	27.62
Os03t0158500-01	Rice	nucleus	34.33	27.58
Os01t0679900-01	Rice	nucleus	28.35	26.44
Os05t0105600-01	Rice	cytosol	26.58	23.67
Os03t0317000-01	Rice	plasma membrane	29.23	23.41
Os04t0129300-01	Rice	nucleus	25.88	21.78
Os01t0329800-01	Rice	cytosol	26.06	20.9

Protein Annotations

EnsemblPlants:Os04t0608800-01	EnsemblPlantsGene:Os04g0608800	EntrezGene:4336934	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF61
PFAM:PF04146	PFscan:PS50882	ProteinID:BAF15731.1	ProteinID:BAS90926.1	RefSeq:XP_015636111.1	SEG:seg
UniParc:UPI0000DD926D	UniProt:Q0JAA6	MapMan:16.5.2.1	:	:	:

Description

YT521-B-like protein family protein. (Os04t0608800-01);Similar to H0702G05.3 protein. (Os04t0608800-02)

Coordinates

chr4:+:30821134..30825426

Molecular Weight (calculated)

63126.2 Da

IEP (calculated)

5.557

GRAVY (calculated)

-0.698

Length

568 amino acids

Sequence
(BLAST)

001: MAAAQQAQDS ADHMEPLESR LVVEKSPSTS ILSSEDHNLS STALHGASSL KSTKSAQEKG SFLGKGGEQH FIYQPNVYTP QPHTVFSGGY LNHLGQWEEY
101: PHVASADGTD AASPVMYSSY SPVPTMGDSQ PYYPLHCPLS SPYYQPPASP SMGYSNSATG MSQFDPMQEY YLPDGLLYSP TPGFHQHFGS FDGTQMQQSV
201: TGIFGQGNIP LASGMHQGSM YSSGSYKARQ QVGNFGGSTP NWSAASRRFS PFDRGFKHDK GSLEFMNEQN RGPRATKPKK EVNNSSTEDK NRKSALINDS
301: NLYNQHDFVI EYEDAKFFVI KSYTEDHVHK SIKYGVWAST ASGNRKLDAA YREAKEKEAT CPIFLFFSVN GSGQFCGVAE MIGPVDFDKS VDYWQQDKWS
401: GQFPVKWHII KDVPNSLLRH IILENNENKP VTNSRDTQEV RLDHGLQMLT IFKNHEVETT ILEDFDFYEQ REKAMLDIRQ RQKQQHTDSE VQKPMVEAKE
501: PVDLMNQISA TFARAVQLGE TKGSREDKPK VEDASAAAVA VPENEPVALA ETEGLLADSE PSPLKESG

Best Arabidopsis Sequence Match ( AT3G13060.2 )
(BLAST)

001: MATTQSHTSD LTSEEQPASL DIMKEQTVPA NNETSASFKS SQEAPVVVHP AKVAPLTGPY GLAGDFAGHL PSSILSPQAQ GFYYRGYENP TGEWDEYSSY
101: VNVEGLDITS PVGFNENASL VYQTGYGYNP QMPYGPYSPA ASPLPSEGQL YSPQQFPFSG ASPYYQQVVP PSMQYITSPT QPELTSLVGV DQQGDNIGPR
201: QSYHPHPIGP FNGNQPNLGF PEWQQGFDGG IWSDWSKPSD MHRHSSSISP ALSPQPLGSY GSYGQNIPMG SQRQRSFYGF GSGSNSYNRG YMHSGGRGQG
301: SNYGSRLISN VGMGNQGWIG VDNSRGRGRV SDPSLGGAYN GTFDILNEQN RGPRASKPKT QVLEELDSAA DSKKNNKGSA KEHEESNNAD FVTDYTNAKL
401: FIIKSYSEDN VHKSIKYNVW ASTPNGNKKL DAAYREAKDE KEPCPLFLLF SVNASSQFCG VAEMVGPVDF EKSVDYWQQD KWSGQFPVKW HIIKDVPNSQ
501: FRHIILENND NKPVTNSRDT QEVKLEQGIE MLKIFKNYDA DTSILDDFGF YEEREKIIQD RKARRQPSLP SAGVVAGENE HKPASAALPT DFMKNMSKSF
601: AQVVRLDEGS KEAVKASSSP DAITTAAVSS GQSN

Arabidopsis Description

ECT5Evolutionarily conserved C-terminal region 5 [Source:UniProtKB/TrEMBL;Acc:Q0WR25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.