Factsheet for VIT_01s0010g03690.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plasma membrane 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002008_P001	Maize	cytosol	9.97	78.08
VIT_09s0054g01600.t01	Wine grape	nucleus	56.47	48.5
GSMUA_Achr4P12480_001	Banana	cytosol	44.06	43.37
Os08t0556000-01	Rice	nucleus	44.93	41.19
GSMUA_Achr4P11560_001	Banana	nucleus	46.15	40.68
HORVU1Hr1G008330.2	Barley	nucleus	45.63	40.65
TraesCS1D01G045100.1	Wheat	nucleus	45.45	40.5
TraesCS1A01G044500.1	Wheat	nucleus	45.1	40.19
TraesCS7A01G276800.3	Wheat	nucleus	43.88	40.16
KXG25412	Sorghum	cytosol	44.76	40.06
TraesCS1B01G057800.3	Wheat	nucleus	44.76	39.88
TraesCS7D01G276800.4	Wheat	nucleus	43.53	39.84
TraesCS7B01G174500.1	Wheat	nucleus	41.08	39.23
EES14722	Sorghum	nucleus	39.69	38.22
Zm00001d024339_P001	Maize	extracellular	38.99	37.67
Os08t0224200-01	Rice	mitochondrion	40.73	37.64
Zm00001d031981_P002	Maize	cytosol	42.66	37.48
Zm00001d049360_P004	Maize	extracellular	38.99	37.42
Zm00001d008913_P001	Maize	cytosol, nucleus, peroxisome	26.05	37.34
GSMUA_Achr1P10560_001	Banana	nucleus	29.02	37.3
Os04t0608800-01	Rice	nucleus	36.01	36.27
GSMUA_Achr4P04600_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	48.78	36.19
TraesCS7B01G182100.2	Wheat	cytosol	36.54	35.3
HORVU7Hr1G058250.46	Barley	cytosol, plastid	29.02	35.02
KXG27074	Sorghum	cytosol	33.57	34.78
HORVU7Hr1G069070.2	Barley	cytosol	35.84	34.75
TraesCS7A01G291700.1	Wheat	cytosol	35.84	34.75
Bra010911.1-P	Field mustard	nucleus	30.59	33.59
CDX90116	Canola	nucleus	30.59	33.59
CDY67303	Canola	nucleus	30.59	33.59
Zm00001d002372_P002	Maize	nucleus	32.34	33.51
TraesCS7D01G285000.1	Wheat	endoplasmic reticulum	35.49	33.17
VIT_19s0085g01100.t01	Wine grape	nucleus	33.57	32.49
AT1G27960.1	Thale cress	cytosol	30.59	32.47
CDY11758	Canola	nucleus, plastid	31.12	32.13
VIT_11s0065g00160.t01	Wine grape	nucleus	39.16	30.48
Zm00001d047072_P001	Maize	mitochondrion	25.17	29.45
VIT_06s0004g00200.t01	Wine grape	nucleus	35.66	28.94
VIT_08s0007g07450.t01	Wine grape	cytosol	34.27	28.24
VIT_05s0020g00460.t01	Wine grape	cytosol	33.39	26.75
VIT_12s0035g00970.t01	Wine grape	plastid	29.02	23.45

Protein Annotations

EntrezGene:100248968	wikigene:100248968	MapMan:16.5.2.1	Gene3D:3.10.590.10	ProteinID:CBI27662	ProteinID:CBI27662.3
UniProt:D7TAY9	EMBL:FN595754	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR007275	EntrezGene:LOC100248968	wikigene:LOC100248968	PFAM:PF04146	PFscan:PS50882	PANTHER:PTHR12357
PANTHER:PTHR12357:SF24	TIGR:TC58543	UniParc:UPI0001982B50	ArrayExpress:VIT_01s0010g03690	EnsemblPlantsGene:VIT_01s0010g03690	EnsemblPlants:VIT_01s0010g03690.t01
unigene:Vvi.11036	RefSeq:XP_002271343	RefSeq:XP_002271343.1	InterPro:YTH_domain	SEG:seg	:

Description

No Description!

Coordinates

chr1:-:21046488..21052812

Molecular Weight (calculated)

63208.3 Da

IEP (calculated)

7.871

GRAVY (calculated)

-0.701

Length

572 amino acids

Sequence
(BLAST)

001: MAATQQGPDR LIPTGFDNVT GKWNEYSSYV NAEGLEIRSS GMYNENPSVV FDGNGYNPQM PYGPYPETTQ LASARGDGKL HAAQQFSISD PLSYQQPIAP
101: NIPYVTSSTP VSQTELPSEI GKQGDCKPFG LNLGYPPSLG SFGSRSNFSE NSDGLGFMSD GSDVFGFGSL WSDCSIPLKE RSKLSSPAAS QQPVGSLNMS
201: RTDFGMASQQ HGSLSRFGSQ SSLNYRGYSS SGINQSSSFR NTSISTTSAM NGWNWLPYDK AKSGGNSDTS FGCTGTIDTL IEQNRGPRAS KPKNRTTANE
301: SFVNNSKNGT CTGVHRESYN RLDFVTEYKD AKFFVIKSYS EDNVHKSIKY GVWVSTPNGN KRLNSAFHEA KEKHGNCPIF LLFSVNASAQ FCGVAEMVGP
401: VDYDKSVDYW KQDKWTGQFP VKWHIIKDVP NSQFRHIILE NNDNKPVTNS RDTQEVELEQ GNEMLNIFRN YESDSSILDD FDFYEDRQKA MQEKKTQHKA
501: SLLAAPMVVG SQQQIRRSLP THLIHKMSKT FAQAVLLNEN DKERSPAGKA VPGAARLRGS RVEPEKTRAT MA

Best Arabidopsis Sequence Match ( AT3G13060.2 )
(BLAST)

001: MATTQSHTSD LTSEEQPASL DIMKEQTVPA NNETSASFKS SQEAPVVVHP AKVAPLTGPY GLAGDFAGHL PSSILSPQAQ GFYYRGYENP TGEWDEYSSY
101: VNVEGLDITS PVGFNENASL VYQTGYGYNP QMPYGPYSPA ASPLPSEGQL YSPQQFPFSG ASPYYQQVVP PSMQYITSPT QPELTSLVGV DQQGDNIGPR
201: QSYHPHPIGP FNGNQPNLGF PEWQQGFDGG IWSDWSKPSD MHRHSSSISP ALSPQPLGSY GSYGQNIPMG SQRQRSFYGF GSGSNSYNRG YMHSGGRGQG
301: SNYGSRLISN VGMGNQGWIG VDNSRGRGRV SDPSLGGAYN GTFDILNEQN RGPRASKPKT QVLEELDSAA DSKKNNKGSA KEHEESNNAD FVTDYTNAKL
401: FIIKSYSEDN VHKSIKYNVW ASTPNGNKKL DAAYREAKDE KEPCPLFLLF SVNASSQFCG VAEMVGPVDF EKSVDYWQQD KWSGQFPVKW HIIKDVPNSQ
501: FRHIILENND NKPVTNSRDT QEVKLEQGIE MLKIFKNYDA DTSILDDFGF YEEREKIIQD RKARRQPSLP SAGVVAGENE HKPASAALPT DFMKNMSKSF
601: AQVVRLDEGS KEAVKASSSP DAITTAAVSS GQSN

Arabidopsis Description

ECT5Evolutionarily conserved C-terminal region 5 [Source:UniProtKB/TrEMBL;Acc:Q0WR25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.