Factsheet for HORVU1Hr1G008330.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G044500.1	Wheat	nucleus	95.33	95.33
TraesCS1D01G045100.1	Wheat	nucleus	95.17	95.17
TraesCS1B01G057800.3	Wheat	nucleus	94.24	94.24
Os08t0556000-01	Rice	nucleus	81.31	83.65
KXG25412	Sorghum	cytosol	75.86	76.21
Zm00001d031981_P002	Maize	cytosol	71.65	70.66
HORVU7Hr1G058250.46	Barley	cytosol, plastid	42.06	56.96
CDY51902	Canola	cytosol	13.55	56.13
GSMUA_Achr4P12480_001	Banana	cytosol	47.98	53.01
VIT_09s0054g01600.t01	Wine grape	nucleus	51.4	49.55
Bra034710.1-P	Field mustard	nucleus	45.48	49.16
GSMUA_Achr4P11560_001	Banana	nucleus	49.53	49.0
AT3G13060.2	Thale cress	nucleus	47.66	48.27
CDY23562	Canola	nucleus	46.42	48.06
CDY44025	Canola	nucleus	46.26	47.75
Bra039366.1-P	Field mustard	nucleus	44.39	47.42
CDY43378	Canola	nucleus	44.7	46.74
CDY24224	Canola	nucleus	44.7	46.74
HORVU7Hr1G069070.2	Barley	cytosol	42.68	46.44
KRH46969	Soybean	endoplasmic reticulum, extracellular	46.57	46.21
VIT_01s0010g03690.t01	Wine grape	cytosol	40.65	45.63
KRH44697	Soybean	mitochondrion	46.73	45.59
GSMUA_Achr4P04600_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	50.62	42.15
Bra006780.1-P	Field mustard	cytosol	31.0	39.1
CDY58572	Canola	nucleus	30.37	38.46
CDX88661	Canola	nucleus	30.37	38.24
AT5G58190.2	Thale cress	nucleus	30.84	37.5
CDY02802	Canola	nucleus	31.0	37.27
CDY32718	Canola	nucleus	30.37	36.86
Solyc05g032850.2.1	Tomato	nucleus	34.42	36.59
Bra020382.1-P	Field mustard	nucleus	30.53	35.44
VIT_11s0065g00160.t01	Wine grape	nucleus	39.41	34.42
CDX90116	Canola	nucleus	27.1	33.4
CDY67303	Canola	nucleus	27.1	33.4
Bra010911.1-P	Field mustard	nucleus	26.95	33.21
CDY11758	Canola	nucleus, plastid	27.57	31.95
AT1G27960.1	Thale cress	cytosol	26.64	31.73
HORVU5Hr1G094950.6	Barley	cytosol, nucleus	32.55	31.43
HORVU5Hr1G104380.1	Barley	plastid	31.78	30.86
HORVU4Hr1G072940.4	Barley	cytosol	33.02	28.57
HORVU5Hr1G104390.3	Barley	plastid	29.59	27.62
HORVU3Hr1G062620.8	Barley	mitochondrion	29.75	24.65
HORVU2Hr1G023660.2	Barley	nucleus	26.48	23.98
HORVU4Hr1G052390.3	Barley	golgi	27.1	23.2
HORVU2Hr1G001810.8	Barley	cytosol	26.48	21.57
HORVU3Hr1G045890.2	Barley	endoplasmic reticulum, peroxisome, plasma membrane	21.03	20.64

Protein Annotations

EnsemblPlants:HORVU1Hr1G008330.2	EnsemblPlantsGene:HORVU1Hr1G008330	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF57	PFAM:PF04146
PFscan:PS50882	SEG:seg	UniParc:UPI000294BD34	UniProt:M0VZC1	MapMan:16.5.2.1	:

Description

No Description!

Coordinates

chrchr1H:+:18353028..18360037

Molecular Weight (calculated)

70611.9 Da

IEP (calculated)

5.308

GRAVY (calculated)

-0.734

Length

642 amino acids

Sequence
(BLAST)

001: MESARAGSER AGTMDSPEPR IEVEQKPVLA SNAKEQTIPG KDEKTVKPTI SLDSSVINLP SDGQAQAGTS NIGGEHNVVY PQHMYSSQAQ PFYYQGPGYE
101: NPPNDWDVYP PYAEGLEAGP AVVYNEDPSM MYHGGYGYDP YAHYSPISTP VPAGVSGDGQ LYSPQQFSFS APYYQQPVQP GMPYLSSPTP ISQGETMMPI
201: DPTQGAFMAD TLSPNSFLFG PRPEWFRSSE GTGSFPSPAA SPQPFGGVSG PFGQSNFPMA SGMMSPQQKP FYGFGTPSDS YGRGFSHSGG FPQATNYGGP
301: FPGYGMNGRS FIPIDKGRRR GRGNSLLCSC DGPLDFLNEQ SRGPRATRPK KQPEDDTKDE KPSAGLDQES YNRTDFVTEY KNARFFIIKS YSEDNVHKSI
401: KYGVWASTTN GNRKLDAAYR EVKEKEEHYP IFLLFSVNAS AQFCGVAEMT GPVNFDKSVE YWQQDKWTGQ FPVKWHIVKD VPNNLFRHII LENNENKPVT
501: NSRDTQEVKL EQGLEMLKIF KDHEDDVSIL DDFDFYEERE KALLENKARL HQQQHLSSPS VSEPKKPSTV PTDLVGHITK TPSVVEPKKP STVPTDPVGH
601: ITKTFAQAVR LGEAKSVSPS GEKASAGDSS VAAKPVEVKE SS

Best Arabidopsis Sequence Match ( AT3G13060.4 )
(BLAST)

001: MNTEEQPASL DIMKEQTVPA NNETSASFKS SQEAPVVVHP AKVAPLTGPY GLAGDFAGHL PSSILSPQAQ GFYYRGYENP TGEWDEYSSY VNVEGLDITS
101: PVGFNENASL VYQTGYGYNP QMPYGPYSPA ASPLPSEGQL YSPQQFPFSG ASPYYQQVVP PSMQYITSPT QPELTSLVGV DQQGDNIGPR QSYHPHPIGP
201: FNGNQPNLGF PEWQQGFDGG IWSDWSKPSD MHRHSSSISP ALSPQPLGSY GSYGQNIPMG SQRQRSFYGF GSGSNSYNRG YMHSGGRGQG SNYGSRLISN
301: VGMGNQGWIG VDNSRGRGRV SDPSLGGAYN GTFDILNEQN RGPRASKPKT QVLEELDSAA DSKKNNKGSA KEHEESNNAD FVTDYTNAKL FIIKSYSEDN
401: VHKSIKYNVW ASTPNGNKKL DAAYREAKDE KEPCPLFLLF SVNASSQFCG VAEMVGPVDF EKSVDYWQQD KWSGQFPVKW HIIKDVPNSQ FRHIILENND
501: NKPVTNSRDT QEVKLEQGIE MLKIFKNYDA DTSILDDFGF YEEREKIIQD RKARRQPSLP SAGVVAGENE HKPASAALPT DFMKNMSKSF AQVVRLDEGS
601: KEAVKASSSP DAITTAAVSS GQSN

Arabidopsis Description

ECT5Evolutionarily conserved C-terminal region 5 [Source:UniProtKB/TrEMBL;Acc:Q0WR25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.