Factsheet for HORVU4Hr1G072940.4

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G017240.4
HORVU1Hr1G017380.4
HORVU2Hr1G027080.5

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13460.1	HORVU1Hr1G017240.4	AT3G17510.1	16113215
AT3G13460.1	HORVU1Hr1G017380.4	AT3G17510.1	16113215
AT3G13460.1	HORVU2Hr1G027080.5	AT3G17510.1	16113215

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G273200.4	Wheat	cytosol	91.11	93.5
TraesCS4A01G031600.2	Wheat	cytosol	91.37	93.0
TraesCS4B01G274500.2	Wheat	plastid	94.34	91.26
Os03t0158500-01	Rice	nucleus	75.88	79.63
KXG40139	Sorghum	plastid	71.56	74.68
Zm00001d048424_P003	Maize	plastid	67.66	67.84
Zm00001d027731_P012	Maize	plastid	70.08	64.76
HORVU5Hr1G094950.6	Barley	cytosol, nucleus	45.42	50.68
KRH43005	Soybean	nucleus	47.84	50.21
KRH59123	Soybean	nucleus	47.44	49.72
CDY57677	Canola	mitochondrion	11.46	49.71
GSMUA_Achr7P27220_001	Banana	cytosol	43.67	49.02
VIT_06s0004g00200.t01	Wine grape	nucleus	45.69	48.09
VIT_08s0007g07450.t01	Wine grape	cytosol	44.74	47.84
CDY23602	Canola	nucleus	40.16	47.76
GSMUA_Achr4P14820_001	Banana	cytosol	21.16	47.43
AT1G55500.5	Thale cress	cytosol	38.54	47.27
Solyc01g028860.2.1	Tomato	nucleus	44.88	47.17
CDY43989	Canola	nucleus	40.03	46.85
Bra027432.1-P	Field mustard	nucleus	39.89	46.69
CDX82538	Canola	nucleus	40.03	46.41
CDY50448	Canola	cytosol	15.9	46.27
Bra001506.1-P	Field mustard	nucleus	39.62	46.01
Bra039400.1-P	Field mustard	nucleus	39.22	45.75
AT3G13460.1	Thale cress	cytosol	41.11	45.73
CDX75712	Canola	nucleus	38.95	45.58
CDY07089	Canola	nucleus	38.81	45.28
PGSC0003DMT400061684	Potato	endoplasmic reticulum, plasma membrane	44.88	45.24
Bra004105.1-P	Field mustard	nucleus	24.12	45.2
CDY07437	Canola	nucleus	25.34	44.66
CDY24182	Canola	nucleus	32.48	44.55
CDY69959	Canola	nucleus	23.85	44.36
CDY42891	Canola	nucleus	23.85	44.25
CDY50867	Canola	nucleus	23.85	44.25
CDY21154	Canola	nucleus	24.26	44.23
Bra008509.1-P	Field mustard	cytosol	25.2	44.21
CDX91541	Canola	mitochondrion	9.7	44.17
CDY39299	Canola	nucleus	25.07	43.97
Bra036423.1-P	Field mustard	nucleus	23.99	43.84
Bra031960.1-P	Field mustard	nucleus	23.18	43.43
CDY29972	Canola	nucleus	23.99	43.41
CDY56132	Canola	nucleus	26.15	43.4
CDY52966	Canola	cytosol	25.88	42.86
AT3G03950.3	Thale cress	cytosol	24.39	42.29
AT5G61020.1	Thale cress	cytosol	26.82	40.2
KRG94807	Soybean	nucleus	35.18	39.61
KRH06717	Soybean	nucleus	34.37	38.46
HORVU5Hr1G104380.1	Barley	plastid	33.56	37.67
KRH70155	Soybean	nucleus	31.4	36.98
Bra018951.1-P	Field mustard	cytosol	12.4	35.52
Bra014253.1-P	Field mustard	cytosol	14.15	35.23
Bra038524.1-P	Field mustard	cytosol	10.65	35.11
HORVU5Hr1G104390.3	Barley	plastid	32.34	34.88
HORVU1Hr1G008330.2	Barley	nucleus	28.57	33.02
HORVU7Hr1G069070.2	Barley	cytosol	24.66	31.02
HORVU7Hr1G058250.46	Barley	cytosol, plastid	19.81	31.01
HORVU3Hr1G062620.8	Barley	mitochondrion	26.95	25.81
HORVU3Hr1G045890.2	Barley	endoplasmic reticulum, peroxisome, plasma membrane	21.56	24.46
HORVU4Hr1G052390.3	Barley	golgi	23.72	23.47
HORVU2Hr1G023660.2	Barley	nucleus	22.37	23.41
HORVU2Hr1G001810.8	Barley	cytosol	22.78	21.45

Protein Annotations

EnsemblPlants:HORVU4Hr1G072940.4	EnsemblPlantsGene:HORVU4Hr1G072940	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF30	PFAM:PF04146
PFscan:PS50882	SEG:seg	UniParc:UPI000B481129	UniProt:A0A287PMB9	MapMan:16.5.2.1	:

Description

No Description!

Coordinates

chrchr4H:-:586906776..586911402

Molecular Weight (calculated)

79548.3 Da

IEP (calculated)

8.422

GRAVY (calculated)

-0.715

Length

742 amino acids

Sequence
(BLAST)

001: AAAAAPAAPA PAAAPAADQA TDLLQKMSLE SQPKAAADGA ELAGATKQGP VASQPLSVSI PQDRSITPVV QDFTDPNMFY LPAYYYGGYD GTMSEWDEYT
101: RYVNQDGVEV APAVYGDIYG YGYAPYGAYS PASSPVPTVD GQMFAAQHYQ YPAYYQPPTP VSSTTQGDQQ PSANADNKPA AKADATKTTT NGVPNGTAHS
201: NSGTAPLGSS YQNSAPTPDG TYRAPLLGGV PSTGYVDSTY GYDTTAAHYA WYDGSAYTNA QQRPTTANYV PSSAYNGNGS SARYQTKSPT PQQPGNRRPT
301: TTTGSATPTY PNRMYSSTQS YNQYGNSVKT GLLYGNNGYG SSGYGSTGYG SSGYGSNGYG SSGYGSSGYD SRLYGRWGVS MDTRYNRPRG RGNGYYGFGN
401: ESQDGTIELN RGPRSGRFKN QKAFGHTVTI AVKGQTLPSS ENKNADDVAD KAQFNLEDFP VQYDDAKFFV IKSYSEDDIH KSIKYNVWAS TTNGNKKLDA
501: AYQEAQAKGS SCPIFLFFSV NTSGQFVGVA EMTGPVDFEK TLEYWQQDKW NGSFSVKWHI VKDVPNNILK HIVLENNEGK PVTNSRDTQD INLEQGIQML
601: KIFKEHVSKT SILEDFTFYE NRQKLMQEKR IKQQQIQKQV WDSRAPNLVA GEKQQEPKVT VPNGVNGEKQ QDAINGKPKS PVANGVNGGV KVPAEKAAPA
701: AGPPAVTYAA KVAQTAAAEK KPAVTEKKPA VANGAVKTGV AA

Best Arabidopsis Sequence Match ( AT1G55500.4 )
(BLAST)

001: MSTVAPPADQ AADVLKKLSL DSKSRTLEIP EPTKKTGVYQ YGAMDSNGQV PSFDRSLSPM LPSDALDPSV FYVPNVYQQP YYYGYGSDYT GYTNSESVDM
101: TSGAYGENAS LVYPQGYGYA AFPYSPATSP APQLGGDGQL YGAQQYQYPF PLTASSGPFA SSVPASTQSK LSTNKAANSA SAGIPKGMNG SAPVKPLNQS
201: ALYGNSALGG GLAAGYQDPR YSYDGFYTPV SWHDGSNFSD VQRSVSGSGV ASSYSKANNN VPATRNQNSS SNSHYTSMYQ PASMTGYAAQ GYYDRVSPNK
301: SYGQYGSTVR SGMGYGSSGY GSRTNERGWL NTDNKYRSRG RGNSYFYGNE NIDGLNELNR GPRAKGTKAT EEVSSEEVKK QTFDESNTEE TVTCVLPDRE
401: ECNRDDFPVE YKDAKFFIIK SYSEDDVHKS IKYNVWASTP NGNKKLDAAY QEAQQKSSGC PVFLFFSVNA SGQFIGLAEM KGPVDFNKNI EYWQQDKWTG
501: SFPLKWHILK DVPNSLLKHI TLEYNENKPV TNSRDTQEVK LEQGLKVVKI FKEHNSKTCI LDDFSFYEAR QKTILEKKAK QQQSQKQARE ENG

Arabidopsis Description

ECT4evolutionarily conserved C-terminal region 4 [Source:TAIR;Acc:AT1G55500]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.