Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008509.1-P | Field mustard | cytosol | 94.41 | 99.76 |
| CDY52966 | Canola | cytosol | 96.2 | 95.98 |
| CDY39299 | Canola | nucleus | 72.93 | 77.07 |
| CDY07437 | Canola | nucleus | 72.48 | 76.96 |
| CDY57677 | Canola | mitochondrion | 27.29 | 71.34 |
| CDX91541 | Canola | mitochondrion | 24.83 | 68.1 |
| CDY50448 | Canola | cytosol | 38.7 | 67.84 |
| AT5G61020.1 | Thale cress | cytosol | 64.65 | 58.38 |
| CDY51902 | Canola | cytosol | 16.11 | 46.45 |
| CDY69959 | Canola | nucleus | 37.36 | 41.85 |
| CDY21154 | Canola | nucleus | 38.03 | 41.77 |
| CDY29972 | Canola | nucleus | 37.81 | 41.22 |
| CDY50867 | Canola | nucleus | 36.69 | 41.0 |
| CDY42891 | Canola | nucleus | 36.69 | 41.0 |
| GSMUA_Achr4P14820_001 | Banana | cytosol | 26.62 | 35.95 |
| CDY05744 | Canola | cytosol | 10.07 | 35.71 |
| CDX82538 | Canola | nucleus | 48.77 | 34.06 |
| GSMUA_Achr7P01490_001 | Banana | nucleus | 42.51 | 33.93 |
| CDX75712 | Canola | nucleus | 48.1 | 33.91 |
| CDY23602 | Canola | nucleus | 46.76 | 33.49 |
| EER93313 | Sorghum | cytosol | 42.73 | 33.39 |
| CDY43989 | Canola | nucleus | 46.98 | 33.12 |
| CDY24182 | Canola | nucleus | 39.6 | 32.72 |
| VIT_08s0007g07450.t01 | Wine grape | cytosol | 50.78 | 32.71 |
| CDY07089 | Canola | nucleus | 46.53 | 32.7 |
| GSMUA_Achr4P22630_001 | Banana | nucleus | 44.97 | 32.37 |
| GSMUA_Achr4P21380_001 | Banana | nucleus | 46.76 | 31.76 |
| GSMUA_Achr4P28430_001 | Banana | nucleus, plastid | 43.62 | 31.71 |
| TraesCS5A01G431200.1 | Wheat | nucleus | 41.61 | 31.58 |
| TraesCS5D01G439100.1 | Wheat | nucleus | 40.94 | 31.12 |
| KRH70155 | Soybean | nucleus | 43.85 | 31.11 |
| CDY22270 | Canola | cytosol | 31.1 | 31.03 |
| CDY56809 | Canola | cytosol | 30.87 | 30.8 |
| CDX87395 | Canola | cytosol | 30.43 | 30.63 |
| Os07t0170300-01 | Rice | plasma membrane | 41.16 | 30.56 |
| GSMUA_Achr5P02830_001 | Banana | cytosol | 42.06 | 30.52 |
| TraesCS5B01G433000.1 | Wheat | cytosol | 40.49 | 30.37 |
| KRG94807 | Soybean | nucleus | 44.74 | 30.35 |
| CDX88524 | Canola | cytosol | 29.98 | 30.32 |
| TraesCS5A01G431100.1 | Wheat | cytosol | 43.4 | 30.22 |
| TraesCS5D01G439200.1 | Wheat | cytosol | 43.4 | 30.22 |
| TraesCS5B01G432900.2 | Wheat | extracellular | 43.62 | 30.09 |
| KRH06717 | Soybean | nucleus | 44.52 | 30.02 |
| EER93461 | Sorghum | nucleus | 44.07 | 29.89 |
| GSMUA_Achr7P27220_001 | Banana | cytosol | 44.07 | 29.8 |
| TraesCS5A01G386600.2 | Wheat | nucleus | 43.85 | 29.56 |
| TraesCS5B01G391500.1 | Wheat | nucleus | 43.62 | 29.46 |
| HORVU5Hr1G094950.6 | Barley | cytosol, nucleus | 43.62 | 29.32 |
| TraesCS5D01G396400.3 | Wheat | nucleus | 43.4 | 29.31 |
| Zm00001d034005_P003 | Maize | plasma membrane | 43.18 | 29.24 |
| Os03t0748000-01 | Rice | plasma membrane | 43.18 | 29.2 |
| Os03t0158500-01 | Rice | nucleus | 45.41 | 28.71 |
| KXG34475 | Sorghum | cytosol | 41.39 | 28.64 |
| CDX79309 | Canola | nucleus | 32.21 | 28.29 |
| HORVU5Hr1G104380.1 | Barley | plastid | 41.83 | 28.29 |
| KXG40139 | Sorghum | plastid | 44.74 | 28.13 |
| CDX68000 | Canola | nucleus | 31.99 | 28.09 |
| Zm00001d007890_P002 | Maize | mitochondrion | 40.04 | 27.41 |
| CDX94944 | Canola | nucleus | 30.43 | 27.36 |
| HORVU5Hr1G104390.3 | Barley | plastid | 41.83 | 27.18 |
| CDY44025 | Canola | nucleus | 37.81 | 27.17 |
| CDY23562 | Canola | nucleus | 37.58 | 27.1 |
| CDY43378 | Canola | nucleus | 37.14 | 27.04 |
| CDY24224 | Canola | nucleus | 37.14 | 27.04 |
| CDX93476 | Canola | nucleus | 29.75 | 26.6 |
| Zm00001d048424_P003 | Maize | plastid | 43.85 | 26.49 |
| CDY67303 | Canola | nucleus | 30.65 | 26.3 |
| CDX90116 | Canola | nucleus | 30.65 | 26.3 |
| HORVU4Hr1G072940.4 | Barley | cytosol | 43.4 | 26.15 |
| TraesCS4D01G273200.4 | Wheat | cytosol | 42.28 | 26.14 |
| Zm00001d018896_P002 | Maize | mitochondrion | 41.16 | 26.06 |
| TraesCS4A01G031600.2 | Wheat | cytosol | 42.28 | 25.93 |
| TraesCS4B01G274500.2 | Wheat | plastid | 43.85 | 25.55 |
| CDY11758 | Canola | nucleus, plastid | 30.43 | 24.55 |
| Zm00001d027731_P012 | Maize | plastid | 43.85 | 24.41 |
| CDY58572 | Canola | nucleus | 27.52 | 24.26 |
| CDY02802 | Canola | nucleus | 28.86 | 24.16 |
| CDX88661 | Canola | nucleus | 27.52 | 24.12 |
| CDY32718 | Canola | nucleus | 28.19 | 23.82 |
| CDY60520 | Canola | cytosol | 6.94 | 23.48 |
| CDX93645 | Canola | nucleus | 29.75 | 21.73 |
| CDY43306 | Canola | cytosol | 29.75 | 21.7 |
Protein Annotations
| EnsemblPlants:CDY56132 | EnsemblPlantsGene:GSBRNA2T00017869001 | Gene3D:3.10.590.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR007275 | InterPro:YTH_domain | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF56 | PFAM:PF04146 |
| PFscan:PS50882 | ProteinID:CDY56132 | ProteinID:CDY56132.1 | SEG:seg | UniParc:UPI0004EEFA1C | UniProt:A0A078J232 |
| MapMan:16.5.2.1 | : | : | : | : | : |
Description
BnaA02g20210DBnaA02g20210D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J232]
Coordinates
chrLK033462:+:26368..28602
Molecular Weight (calculated)
50248.6 Da
IEP (calculated)
8.122
GRAVY (calculated)
-0.795
Length
447 amino acids
Sequence
(BLAST)
(BLAST)
001: MATTISPSDQ AADLLHNLSL DAETMVKVPD TGNKDVYGGT KTGKTNLLPN NVRAVTGLNQ KKLAFNQKGS YGTYPTGYYT PPYQYPRYGY DMNYASGKTN
101: ISLQYPHLST YQGRSGSYGQ SFGYNMDSMY SMYGPYMSGY GYDSYGYGAY KQTPSWYKTM AYGFSGYGKE NFAGLDELNR GPRAKGFKIG HESSQPETLK
201: EQEIEKKTSE DVSLPDSKDY NKEDFSETYS NAKLFVIKSY SEDDIHKSIK YNVWSSTPNG NKKLDAAYNE AKEKSNGSCP VFLMFSVNTS GQFVGLAEMV
301: GPVDFNQTVE YWQQDKWIGC FPVKWHIVKD IPNSSLRHIT LENNENKPVT NSRDTQEVNL EQCMKVIKIF KEHASKTCIL DDFVFYESRE KIIKEGKKKQ
401: QQYKKKQALA AIDKKATPKD ETKETSTAPQ VASEISQNGV AEVASAC
101: ISLQYPHLST YQGRSGSYGQ SFGYNMDSMY SMYGPYMSGY GYDSYGYGAY KQTPSWYKTM AYGFSGYGKE NFAGLDELNR GPRAKGFKIG HESSQPETLK
201: EQEIEKKTSE DVSLPDSKDY NKEDFSETYS NAKLFVIKSY SEDDIHKSIK YNVWSSTPNG NKKLDAAYNE AKEKSNGSCP VFLMFSVNTS GQFVGLAEMV
301: GPVDFNQTVE YWQQDKWIGC FPVKWHIVKD IPNSSLRHIT LENNENKPVT NSRDTQEVNL EQCMKVIKIF KEHASKTCIL DDFVFYESRE KIIKEGKKKQ
401: QQYKKKQALA AIDKKATPKD ETKETSTAPQ VASEISQNGV AEVASAC
001: MANPDHVSDV LHNLSIDPTT KALAPDSETK GAYGGNGNDF LLNDELVEAT KIGKPSLLSK DGGVTKDKGS NLKKLGYQSA AYNAKGSYGK GAYAYGYYPP
101: AYQYPRHGYT GSYASGKTNL QYQYLTQQGR SAGNGQSYGG YMDNIYSNYG MCGPYTNGYG YGSYGYDSWK YMPNWYAVNN TYKPRNGYHG YGKENIEGLN
201: EMNRGPRAKG FNSQDGSKVM AVSLKEQRVT ETEKLSEDVS LLDPKDYNKI DFPETYTEAK FYVIKSYSED DIHKSIKYSV WSSTPNGNKK LDASYNEAKQ
301: KSDGCPVFLL FSVNTSGQFV GLAEMVGPVD FNKTVEYWQQ DKWIGCFPVK WHFVKDIPNS SLRHITLENN ENKPVTNSRD TQEVKLEQGI KVIKIFKDHA
401: SKTCILDDFE FYENRQKIIQ ERKSKHLQIK KQTLVANADK GVMSKINLVK PQESTTASED AAALGVAAEV TKESKVVKET ELPVEKNAVA TAC
101: AYQYPRHGYT GSYASGKTNL QYQYLTQQGR SAGNGQSYGG YMDNIYSNYG MCGPYTNGYG YGSYGYDSWK YMPNWYAVNN TYKPRNGYHG YGKENIEGLN
201: EMNRGPRAKG FNSQDGSKVM AVSLKEQRVT ETEKLSEDVS LLDPKDYNKI DFPETYTEAK FYVIKSYSED DIHKSIKYSV WSSTPNGNKK LDASYNEAKQ
301: KSDGCPVFLL FSVNTSGQFV GLAEMVGPVD FNKTVEYWQQ DKWIGCFPVK WHFVKDIPNS SLRHITLENN ENKPVTNSRD TQEVKLEQGI KVIKIFKDHA
401: SKTCILDDFE FYENRQKIIQ ERKSKHLQIK KQTLVANADK GVMSKINLVK PQESTTASED AAALGVAAEV TKESKVVKET ELPVEKNAVA TAC
Arabidopsis Description
ECT3ECT3 [Source:UniProtKB/TrEMBL;Acc:A0A178UM32]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.