Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93645 | Canola | nucleus | 91.19 | 91.34 |
| AT1G48110.2 | Thale cress | nucleus | 77.32 | 74.18 |
| KRH36908 | Soybean | cytosol | 37.68 | 52.03 |
| CDY51902 | Canola | cytosol | 11.26 | 44.52 |
| CDY57677 | Canola | mitochondrion | 12.4 | 44.44 |
| VIT_05s0020g00460.t01 | Wine grape | cytosol | 49.1 | 42.16 |
| KRH02430 | Soybean | cytosol | 46.66 | 41.21 |
| KRH50636 | Soybean | cytosol | 46.17 | 40.72 |
| Solyc12g099090.1.1 | Tomato | cytosol | 45.02 | 40.0 |
| PGSC0003DMT400011739 | Potato | cytosol | 44.7 | 39.2 |
| CDY50448 | Canola | cytosol | 15.99 | 38.43 |
| KRH11876 | Soybean | endoplasmic reticulum | 43.56 | 38.09 |
| CDX88524 | Canola | cytosol | 26.1 | 36.2 |
| CDX87395 | Canola | cytosol | 26.1 | 36.04 |
| CDY22270 | Canola | cytosol | 25.61 | 35.04 |
| CDY56809 | Canola | cytosol | 25.45 | 34.82 |
| CDX91541 | Canola | mitochondrion | 8.81 | 33.13 |
| CDY50867 | Canola | nucleus | 21.37 | 32.75 |
| CDY42891 | Canola | nucleus | 21.37 | 32.75 |
| CDY69959 | Canola | nucleus | 21.21 | 32.58 |
| CDX68000 | Canola | nucleus | 26.92 | 32.42 |
| CDX79309 | Canola | nucleus | 26.92 | 32.42 |
| CDY24182 | Canola | nucleus | 28.55 | 32.35 |
| CDY07437 | Canola | nucleus | 21.86 | 31.83 |
| CDY39299 | Canola | nucleus | 21.86 | 31.68 |
| CDY21154 | Canola | nucleus | 20.72 | 31.2 |
| CDY29972 | Canola | nucleus | 20.72 | 30.98 |
| CDY05744 | Canola | cytosol | 6.2 | 30.16 |
| CDY52966 | Canola | cytosol | 21.86 | 29.91 |
| Os03t0317000-01 | Rice | plasma membrane | 34.42 | 29.76 |
| CDY56132 | Canola | nucleus | 21.7 | 29.75 |
| CDY07089 | Canola | nucleus | 30.67 | 29.56 |
| CDY23602 | Canola | nucleus | 30.02 | 29.49 |
| CDY43989 | Canola | nucleus | 29.85 | 28.86 |
| CDY58572 | Canola | nucleus | 23.82 | 28.8 |
| CDX82538 | Canola | nucleus | 30.02 | 28.75 |
| CDY44025 | Canola | nucleus | 29.04 | 28.62 |
| CDY23562 | Canola | nucleus | 28.87 | 28.55 |
| CDX88661 | Canola | nucleus | 23.65 | 28.43 |
| TraesCS4B01G179100.3 | Wheat | cytosol, nucleus, plastid | 32.63 | 28.01 |
| GSMUA_Achr1P24980_001 | Banana | nucleus | 37.85 | 27.95 |
| CDX75712 | Canola | nucleus | 28.87 | 27.92 |
| TraesCS4D01G180500.5 | Wheat | cytosol, nucleus, plastid | 32.46 | 27.91 |
| CDY43378 | Canola | nucleus | 27.9 | 27.85 |
| CDX90116 | Canola | nucleus | 23.65 | 27.83 |
| CDY67303 | Canola | nucleus | 23.65 | 27.83 |
| CDY24224 | Canola | nucleus | 27.73 | 27.69 |
| TraesCS4A01G125600.3 | Wheat | cytosol, nucleus, plastid | 32.46 | 27.68 |
| CDY02802 | Canola | nucleus | 23.98 | 27.53 |
| CDY32718 | Canola | nucleus | 23.65 | 27.41 |
| CDY11758 | Canola | nucleus, plastid | 23.98 | 26.53 |
| GSMUA_Achr8P29890_001 | Banana | cytosol | 35.07 | 26.51 |
| HORVU4Hr1G052390.3 | Barley | golgi | 31.97 | 26.13 |
| CDX94944 | Canola | nucleus | 21.04 | 25.96 |
| Os01t0329800-01 | Rice | cytosol | 29.36 | 25.42 |
| CDX93476 | Canola | nucleus | 20.72 | 25.4 |
| TraesCS3B01G232300.2 | Wheat | cytosol | 27.73 | 24.75 |
| TraesCS3A01G199100.2 | Wheat | cytosol | 27.73 | 24.67 |
| TraesCS3D01G199400.2 | Wheat | cytosol | 27.57 | 24.56 |
| KXG24185 | Sorghum | nucleus | 28.55 | 23.87 |
| Zm00001d034996_P005 | Maize | cytosol | 26.75 | 23.84 |
| Zm00001d049729_P008 | Maize | cytosol | 27.9 | 23.75 |
| HORVU3Hr1G045890.2 | Barley | endoplasmic reticulum, peroxisome, plasma membrane | 25.12 | 23.55 |
| Zm00001d010826_P001 | Maize | cytosol | 15.33 | 22.71 |
| TraesCS1B01G128700.1 | Wheat | cytosol | 25.77 | 22.48 |
| OQU77486 | Sorghum | cytosol | 25.77 | 22.32 |
| TraesCS1A01G105700.1 | Wheat | cytosol | 25.45 | 22.22 |
| TraesCS1D01G109300.1 | Wheat | cytosol | 25.45 | 22.1 |
| CDY60520 | Canola | cytosol | 4.4 | 20.45 |
Protein Annotations
| EnsemblPlants:CDY43306 | EnsemblPlantsGene:GSBRNA2T00076349001 | Gene3D:3.10.590.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR007275 | InterPro:YTH_domain | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF22 | PFAM:PF04146 |
| PFscan:PS50882 | ProteinID:CDY43306 | ProteinID:CDY43306.1 | SEG:seg | UniParc:UPI0004EF22BD | UniProt:A0A078I0D3 |
| MapMan:16.5.2.1 | : | : | : | : | : |
Description
BnaC06g01620DBnaC06g01620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I0D3]
Coordinates
chrLK032551:+:253259..256638
Molecular Weight (calculated)
67410.0 Da
IEP (calculated)
7.675
GRAVY (calculated)
-0.743
Length
613 amino acids
Sequence
(BLAST)
(BLAST)
001: MYTSEGAQAP DFVADQGIYY PVDPNYAYYC TGYESPGEWE NHQMFFGADG SQVQYQGGQN ENSPYIYYTP SYGYAHAQSP YNPFNPYIPG ADSPFVASQQ
101: FYPLPPYPTL ASSSYAAHPD IVSSSSANSL VETGSAANRG RSDGRGSRNR NASAADGIQR NPPSVSRSSE KPRPNPGGQN RPLSTEKRVS TPFPALQGKA
201: ISVSTQSVDV VSSSRVSSSG QLDIAPPPER NGLSSTATNN NNPRPKLYGV HANISSRSKG PRSQLVVKAY TTKAGNADAE GNIVIDPNLY NKEDLRIDYT
301: NAKFFVIKSY SEDDVHKSIK YNVWSSTLHG NKKLQSAYED AQRIATEKSC ECPIFLFFSV NASGLFCGMA EMTGPVSFEK DMDFWQQDKW SGSFPVKWHI
401: IKDVPNSYFR HIILHNNENK PVTNSRDTQE IMMKQGLEVL KIFKGHAERT SLLDDFAYYE NRQRVMHDER NRLPYRSFLS PVPVPRPDIS DRNKKNSEGP
501: SKSDGNEQTT VKEGSKEDTT TLIQKKITSL TVSPTDTDSN PTTGSHLNQS QAKSKPSPSV SVKKTDPPEV VDSPLSEDSD TVKVGSLPIK VTGSPPIVTV
601: GTIPLDPGSL QKK
101: FYPLPPYPTL ASSSYAAHPD IVSSSSANSL VETGSAANRG RSDGRGSRNR NASAADGIQR NPPSVSRSSE KPRPNPGGQN RPLSTEKRVS TPFPALQGKA
201: ISVSTQSVDV VSSSRVSSSG QLDIAPPPER NGLSSTATNN NNPRPKLYGV HANISSRSKG PRSQLVVKAY TTKAGNADAE GNIVIDPNLY NKEDLRIDYT
301: NAKFFVIKSY SEDDVHKSIK YNVWSSTLHG NKKLQSAYED AQRIATEKSC ECPIFLFFSV NASGLFCGMA EMTGPVSFEK DMDFWQQDKW SGSFPVKWHI
401: IKDVPNSYFR HIILHNNENK PVTNSRDTQE IMMKQGLEVL KIFKGHAERT SLLDDFAYYE NRQRVMHDER NRLPYRSFLS PVPVPRPDIS DRNKKNSEGP
501: SKSDGNEQTT VKEGSKEDTT TLIQKKITSL TVSPTDTDSN PTTGSHLNQS QAKSKPSPSV SVKKTDPPEV VDSPLSEDSD TVKVGSLPIK VTGSPPIVTV
601: GTIPLDPGSL QKK
001: MYTSEAAPDF VVDQGMYYPV DASYGYYCTG YESPGDWENH QMFFGVDGSE VQYTGGQNEN SPYICYTPSY GYAQSPYNPF NPYIPGASIG VDSAFVAPQQ
101: FYSIPPYQSV ATSPTFVPYA IQPEIVSNSS TNSLVETGSA NRGRSDGRGS RQRSGTATAG LQRNDPKLPA GNSLGKISEK PRPNSGQSRQ SEMDKSDSTS
201: SSGQARQGRV TSVSAQPVDV VSSSRVSSFR QLDIAPPQLN DFSKIATNNN NIRPKLYGGH ANIIPDTVRE QNRGRRSRAL GNQLIVKAYT TKAGNADAEG
301: NIVINPSQYN KEDLRIDYSN AKFFVIKSYS EDDVHKSIKY NVWSSTLHGN KKLQSAYEDA QRIATEKSCE CPIFLFFSVN ASGLFCGMAE MTGPVSFDKD
401: MDFWQQDKWS GSFPVKWHII KDVPNSYFRH IILQNNENKP VTNSRDTQEI MLKQGLEVLK IFKDHMERTS LLDDFVYYES RQRVMQDERT RLPYRTFLND
501: LPLPRPDLSD RNKKTPLESF KKPSVISAKT EELPSKSEGN EETTVKEGNE EDTSSTQKKI SSLTIDPSGT DSNPTTVSHL NQKSQAKSKP NSSGSLKKTD
601: PSEVVDASLS DKNDSFKVTG SPAILTVGTI PLDPKSLQK
101: FYSIPPYQSV ATSPTFVPYA IQPEIVSNSS TNSLVETGSA NRGRSDGRGS RQRSGTATAG LQRNDPKLPA GNSLGKISEK PRPNSGQSRQ SEMDKSDSTS
201: SSGQARQGRV TSVSAQPVDV VSSSRVSSFR QLDIAPPQLN DFSKIATNNN NIRPKLYGGH ANIIPDTVRE QNRGRRSRAL GNQLIVKAYT TKAGNADAEG
301: NIVINPSQYN KEDLRIDYSN AKFFVIKSYS EDDVHKSIKY NVWSSTLHGN KKLQSAYEDA QRIATEKSCE CPIFLFFSVN ASGLFCGMAE MTGPVSFDKD
401: MDFWQQDKWS GSFPVKWHII KDVPNSYFRH IILQNNENKP VTNSRDTQEI MLKQGLEVLK IFKDHMERTS LLDDFVYYES RQRVMQDERT RLPYRTFLND
501: LPLPRPDLSD RNKKTPLESF KKPSVISAKT EELPSKSEGN EETTVKEGNE EDTSSTQKKI SSLTIDPSGT DSNPTTVSHL NQKSQAKSKP NSSGSLKKTD
601: PSEVVDASLS DKNDSFKVTG SPAILTVGTI PLDPKSLQK
Arabidopsis Description
ECT7evolutionarily conserved C-terminal region 7 [Source:TAIR;Acc:AT1G48110]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.