Factsheet for TraesCS4B01G179100.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G180500.5	Wheat	cytosol, nucleus, plastid	97.34	97.48
TraesCS4A01G125600.3	Wheat	cytosol, nucleus, plastid	96.64	95.97
HORVU4Hr1G052390.3	Barley	golgi	87.68	83.47
Os03t0317000-01	Rice	plasma membrane	64.85	65.3
KRH36908	Soybean	cytosol	25.63	41.22
AT3G17330.1	Thale cress	nucleus	28.57	34.29
CDX93645	Canola	nucleus	28.01	32.68
CDY43306	Canola	cytosol	28.01	32.63
KRH50636	Soybean	cytosol	31.65	32.52
Bra018708.1-P	Field mustard	nucleus	27.59	32.4
KRH02430	Soybean	cytosol	31.37	32.28
VIT_05s0020g00460.t01	Wine grape	cytosol	31.37	31.37
AT1G48110.2	Thale cress	nucleus	28.01	31.3
Solyc12g099090.1.1	Tomato	cytosol	30.11	31.16
PGSC0003DMT400011739	Potato	cytosol	30.39	31.04
KRH11876	Soybean	endoplasmic reticulum	29.27	29.81
TraesCS5B01G433000.1	Wheat	cytosol	24.65	29.53
GSMUA_Achr1P24980_001	Banana	nucleus	33.61	28.92
TraesCS7B01G182100.2	Wheat	cytosol	23.81	28.72
TraesCS5B01G391500.1	Wheat	nucleus	26.33	28.4
GSMUA_Achr8P29890_001	Banana	cytosol	31.93	28.11
TraesCS7B01G174500.1	Wheat	nucleus	23.53	28.05
TraesCS1B01G057800.3	Wheat	nucleus	25.21	28.04
TraesCS3B01G301100.1	Wheat	nucleus	26.75	27.76
TraesCS5B01G432900.2	Wheat	extracellular	25.07	27.62
TraesCS4B01G274500.2	Wheat	plastid	26.33	24.51
TraesCS3B01G232300.2	Wheat	cytosol	22.41	23.29
TraesCS2B01G010200.1	Wheat	cytosol	19.33	19.33
TraesCS1B01G128700.1	Wheat	cytosol	18.91	19.2

Protein Annotations

EnsemblPlants:TraesCS4B01G179100.3	EnsemblPlantsGene:TraesCS4B01G179100	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF60	PFAM:PF04146
PFscan:PS50882	SEG:seg	MapMan:16.5.2.1	:	:	:

Description

No Description!

Coordinates

chr4B:-:392107930..392111965

Molecular Weight (calculated)

77069.5 Da

IEP (calculated)

6.425

GRAVY (calculated)

-0.596

Length

714 amino acids

Sequence
(BLAST)

001: MMSGFGTNSA IGSSSLPSRV VYNTGNDLPV EYIYDQGLSY PATNGYAYYG GFEPPVGWSE NTNYWGVDGQ YLQLTNDNLP YVYCTPGYEF SYSSQDQYTS
101: YMPGMFMGVD GSVVGSQQYF TNPYQPPGSP SGYFPVYLQP TTDLSSAVSL EPPVFSTGTS VASRPANTSI KDTHQMSGNT MASRTVPSAS PAIGSSHRAY
201: QNQSTNKPSD LPGANVARHD KPSTSHLTVL VDTDKNFQTA SGMGSSGDNG QITDRAEVAP VAAMVGEGAQ SKAVSSSAVK NIVIHPDQYN KADFPCDHPD
301: AKFFVIKSYS EDDVHKSIKY NVWSSTPNGN RRLDAAYSEA KGSQRKCPIF LFFSVNTSGQ FCGVAEMVGP VDFHKDMDFW QQDKWSGSFP LKWHLVKDVP
401: NSTFRHIILE NNENKPVTNS RDTQEIPYKS GINMLKLFKS SPMTTSILDD FPFYEGRQKA MLEQKRRSLG RSFGRLTYVP ALVAKRSVVV EGEPSEVGEG
501: ISSKDPHPGK TGQDSGACEQ PDKTSQTKDG VVTQVLKKDA VSPVEQPEHV KTERHSLDGI HQQNEGCSVS VSPENAGREH AGLSELVKSN GKVYSDRESQ
601: PVISSTEPDS SGRKGLSQEF GGHGPSDRTK GGASGITKDM KATLLKKPEG LSTSHMDGQA KGIVNESPTG VVKVGSVRIK LNVAGGSSSE IIGDGSLELK
701: GAEHTEQGIP TKLS

Best Arabidopsis Sequence Match ( AT3G17330.1 )
(BLAST)

001: MYTEGASDFV IDQSMYYPAY YSSGYDSSVG LQGGQNENAP YICYTPSYGY AQSPYNPYNP YIPGASIGVD SSFVGFQQYY SDPPYESAAS SPTYVPYVIQ
101: PDMVSNSSTD SLVANGGQSD GRGSMQRNGS AIAGLPKDAP KSTTTGQYKQ PGIPKNVSTT ASAHSLQGKT AYANTLLPYG KSDIANGVSS IASYSYKPCS
201: KIYDARGDNN TTGSTYTSEQ NRGSRTRRSR NQLIVKAYTT KAGNADAEGN IVINPDRYNK EDFSIEYSDA RFFVIKSYSE DDVHKSIKYG VWSSTLNGNK
301: KLQSVYEDAQ RIATEKSREC PIFLFFSVNS SGLFCGVAEM TGPVSFDRDM DFWQQDKWSG SFPVKWHIIK DVPNSYFRHI ILHNNENKPV TNSRDTQEII
401: LKQGLEVLKL FKHHAEKTSL LDDFMYYEDR QRLMQEERAR LPFRTFRRPF PVLNLDFSDR SKKSSKDVVK KPSVTSAETK VVQLKNSDGD EKSNTQEATD
501: DSTPSTLKFG SLAIKPTAGT TFNPTQPKPK PTPSLGSDHK SDSSEEVTGS LADDIVSVGS LPIKVKGSKE LSSKIAAVGT SPLSTQDQFR SKPGF

Arabidopsis Description

ECT6At3g17330 [Source:UniProtKB/TrEMBL;Acc:Q1JPL5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.