Factsheet for TraesCS5B01G432900.2

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid, secretory
MultiLoc:	extracellular
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G080500.2
TraesCS1A01G080600.1
TraesCS1A01G080700.1
TraesCS1B01G098600.1
TraesCS1B01G098700.2
TraesCS1D01G082200.1
TraesCS1D01G082500.1
TraesCS1D01G082600.1
TraesCS2A01G150600.2
TraesCS2B01G175800.2
TraesCS2D01G155700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13460.1	TraesCS1A01G080500.2	AT3G17510.1	16113215
AT3G13460.1	TraesCS1A01G080600.1	AT3G17510.1	16113215
AT3G13460.1	TraesCS1A01G080700.1	AT3G17510.1	16113215
AT3G13460.1	TraesCS1B01G098600.1	AT3G17510.1	16113215
AT3G13460.1	TraesCS1B01G098700.2	AT3G17510.1	16113215
AT3G13460.1	TraesCS1D01G082200.1	AT3G17510.1	16113215
AT3G13460.1	TraesCS1D01G082500.1	AT3G17510.1	16113215
AT3G13460.1	TraesCS1D01G082600.1	AT3G17510.1	16113215
AT3G13460.1	TraesCS2A01G150600.2	AT3G17510.1	16113215
AT3G13460.1	TraesCS2B01G175800.2	AT3G17510.1	16113215
AT3G13460.1	TraesCS2D01G155700.1	AT3G17510.1	16113215

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G439200.1	Wheat	cytosol	94.44	95.33
TraesCS5A01G431100.1	Wheat	cytosol	94.14	95.02
HORVU5Hr1G104390.3	Barley	plastid	89.97	84.74
EER93313	Sorghum	cytosol	57.87	65.56
TraesCS5B01G433000.1	Wheat	cytosol	57.25	62.25
Os07t0170300-01	Rice	plasma membrane	51.23	55.15
CDY57677	Canola	mitochondrion	13.89	52.63
Zm00001d007890_P002	Maize	mitochondrion	47.38	47.01
Bra004105.1-P	Field mustard	nucleus	27.93	45.71
Zm00001d018896_P002	Maize	mitochondrion	49.69	45.61
CDY07437	Canola	nucleus	29.48	45.37
CDY39299	Canola	nucleus	29.17	44.68
Bra008509.1-P	Field mustard	cytosol	28.7	43.97
CDY56132	Canola	nucleus	30.09	43.62
CDY50448	Canola	cytosol	17.13	43.53
CDY52966	Canola	cytosol	29.78	43.08
CDX91541	Canola	mitochondrion	10.34	41.1
AT3G03950.3	Thale cress	cytosol	26.85	40.65
Bra036423.1-P	Field mustard	nucleus	25.46	40.64
AT5G61020.1	Thale cress	cytosol	31.02	40.61
CDY21154	Canola	nucleus	25.46	40.54
CDY69959	Canola	nucleus	24.85	40.35
CDY29972	Canola	nucleus	25.46	40.24
Bra031960.1-P	Field mustard	nucleus	24.38	39.9
AT1G55500.5	Thale cress	cytosol	36.88	39.5
CDY42891	Canola	nucleus	24.38	39.5
CDY50867	Canola	nucleus	24.38	39.5
VIT_06s0004g00200.t01	Wine grape	nucleus	41.67	38.3
CDX75712	Canola	nucleus	36.73	37.54
CDY23602	Canola	nucleus	36.11	37.5
VIT_08s0007g07450.t01	Wine grape	cytosol	40.12	37.46
CDY43989	Canola	nucleus	36.57	37.38
Bra027432.1-P	Field mustard	nucleus	36.42	37.22
CDX82538	Canola	nucleus	36.73	37.19
TraesCS5B01G391500.1	Wheat	nucleus	37.96	37.16
AT3G13460.1	Thale cress	cytosol	37.96	36.88
CDY24182	Canola	nucleus	30.71	36.78
Bra001506.1-P	Field mustard	nucleus	36.27	36.78
KRH43005	Soybean	nucleus	39.97	36.63
KRH59123	Soybean	nucleus	39.97	36.58
Solyc01g028860.2.1	Tomato	nucleus	39.66	36.4
CDY07089	Canola	nucleus	35.49	36.16
Bra039400.1-P	Field mustard	nucleus	35.49	36.16
Bra018951.1-P	Field mustard	cytosol	14.35	35.91
Bra014253.1-P	Field mustard	cytosol	16.36	35.57
Bra038524.1-P	Field mustard	cytosol	12.19	35.11
PGSC0003DMT400061684	Potato	endoplasmic reticulum, plasma membrane	39.35	34.65
KRG94807	Soybean	nucleus	34.57	33.99
KRH06717	Soybean	nucleus	33.95	33.18
KRH70155	Soybean	nucleus	32.25	33.17
TraesCS4B01G274500.2	Wheat	plastid	38.58	32.59
TraesCS7B01G182100.2	Wheat	cytosol	27.31	29.9
TraesCS1B01G057800.3	Wheat	nucleus	28.55	28.82
TraesCS7B01G174500.1	Wheat	nucleus	26.54	28.71
TraesCS4B01G179100.3	Wheat	cytosol, nucleus, plastid	27.62	25.07
TraesCS3B01G301100.1	Wheat	nucleus	26.39	24.85
TraesCS2B01G010200.1	Wheat	cytosol	25.0	22.69
TraesCS3B01G232300.2	Wheat	cytosol	22.84	21.54
TraesCS1B01G128700.1	Wheat	cytosol	18.83	17.35

Protein Annotations

EnsemblPlants:TraesCS5B01G432900.2	EnsemblPlantsGene:TraesCS5B01G432900	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF34	PFAM:PF04146
PFscan:PS50882	SEG:seg	MapMan:16.5.2.1	:	:	:

Description

No Description!

Coordinates

chr5B:-:607474132..607479443

Molecular Weight (calculated)

70085.8 Da

IEP (calculated)

8.678

GRAVY (calculated)

-0.650

Length

648 amino acids

Sequence
(BLAST)

001: MALAADRILS LLCCSGDAAD LLHKLSLDPK GVAGQGKEAQ RKVSAAPNGR LNGVVASPSP QVASAGQWPA MGLQDYKNAN MYGAGADAYQ YYYGGWGDYS
101: VYVGLDGAES LNPGAYGDMY CYPQYGVASS GYDGQMYGSQ HYQYPSTFLQ PQTTSTTKPA YKPNAGKSDP LPQKDASAAP AAYQKPGLVN ASKANSTSAD
201: GSTGLKKTTY PVKPSGRSAS YQNNGDKAAY PSYGGHTQQK LPVGNTTSTA SNPKTKGLLG QNSAMGPQTP GYMSSMYSSV MYNANAYGPD YWYGSHLYGS
301: GMYGGWNVLS DGKYKPRPKT YGSYRFGNEN IDGLNELKRG PRSTAIKNEQ GTGEAAVAPA KGQELPTGDA SNAVVQDQYN KADFAETYSD AKFFIIKSYS
401: EDDVHKSIKY NVWASTPSGN KRLDAAYQAA KDKSSNSPVF LLFSVNTSGQ FIGLAEMVGQ VDFNKTVEYW QQDKWTGCFP VKWHIVKDIP NTLLKHIILE
501: YNENKPVTNS RDTQEVRLEQ GLQVLKIFKD HVCKTSMLDD FGFYDNREKI MQEKKSKRQQ PLEKIMNKKP LSVNNTENQD VDGKQGMMNK KPLSTSNTEN
601: QDVDAKQGLQ ELKVLGEKNP VVENGVAAGA VNGVAPTDAG PAAVAVVC

Best Arabidopsis Sequence Match ( AT1G55500.4 )
(BLAST)

001: MSTVAPPADQ AADVLKKLSL DSKSRTLEIP EPTKKTGVYQ YGAMDSNGQV PSFDRSLSPM LPSDALDPSV FYVPNVYQQP YYYGYGSDYT GYTNSESVDM
101: TSGAYGENAS LVYPQGYGYA AFPYSPATSP APQLGGDGQL YGAQQYQYPF PLTASSGPFA SSVPASTQSK LSTNKAANSA SAGIPKGMNG SAPVKPLNQS
201: ALYGNSALGG GLAAGYQDPR YSYDGFYTPV SWHDGSNFSD VQRSVSGSGV ASSYSKANNN VPATRNQNSS SNSHYTSMYQ PASMTGYAAQ GYYDRVSPNK
301: SYGQYGSTVR SGMGYGSSGY GSRTNERGWL NTDNKYRSRG RGNSYFYGNE NIDGLNELNR GPRAKGTKAT EEVSSEEVKK QTFDESNTEE TVTCVLPDRE
401: ECNRDDFPVE YKDAKFFIIK SYSEDDVHKS IKYNVWASTP NGNKKLDAAY QEAQQKSSGC PVFLFFSVNA SGQFIGLAEM KGPVDFNKNI EYWQQDKWTG
501: SFPLKWHILK DVPNSLLKHI TLEYNENKPV TNSRDTQEVK LEQGLKVVKI FKEHNSKTCI LDDFSFYEAR QKTILEKKAK QQQSQKQARE ENG

Arabidopsis Description

ECT4evolutionarily conserved C-terminal region 4 [Source:TAIR;Acc:AT1G55500]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.