Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G396400.3 | Wheat | nucleus | 98.49 | 98.49 |
| TraesCS5A01G386600.2 | Wheat | nucleus | 97.89 | 97.74 |
| HORVU5Hr1G094950.6 | Barley | cytosol, nucleus | 95.47 | 95.04 |
| EER93461 | Sorghum | nucleus | 78.7 | 79.06 |
| Os03t0748000-01 | Rice | plasma membrane | 77.49 | 77.61 |
| Zm00001d034005_P003 | Maize | plasma membrane | 77.19 | 77.42 |
| VIT_06s0004g00200.t01 | Wine grape | nucleus | 54.53 | 51.21 |
| CDY57677 | Canola | mitochondrion | 13.14 | 50.88 |
| GSMUA_Achr4P14820_001 | Banana | cytosol | 25.38 | 50.76 |
| KRH43005 | Soybean | nucleus | 52.27 | 48.94 |
| KRH59123 | Soybean | nucleus | 51.96 | 48.59 |
| GSMUA_Achr7P27220_001 | Banana | cytosol | 48.19 | 48.26 |
| Solyc01g028860.2.1 | Tomato | nucleus | 50.15 | 47.03 |
| CDY69959 | Canola | nucleus | 27.79 | 46.12 |
| Bra004105.1-P | Field mustard | nucleus | 27.49 | 45.96 |
| AT1G55500.5 | Thale cress | cytosol | 41.99 | 45.95 |
| PGSC0003DMT400061684 | Potato | endoplasmic reticulum, plasma membrane | 51.06 | 45.92 |
| VIT_08s0007g07450.t01 | Wine grape | cytosol | 48.04 | 45.82 |
| CDY50867 | Canola | nucleus | 27.64 | 45.75 |
| CDY42891 | Canola | nucleus | 27.64 | 45.75 |
| CDY07437 | Canola | nucleus | 28.85 | 45.37 |
| CDY21154 | Canola | nucleus | 27.79 | 45.21 |
| CDY39299 | Canola | nucleus | 28.85 | 45.15 |
| CDX82538 | Canola | nucleus | 43.35 | 44.84 |
| Bra036423.1-P | Field mustard | nucleus | 27.49 | 44.83 |
| CDY50448 | Canola | cytosol | 17.22 | 44.71 |
| Bra031960.1-P | Field mustard | nucleus | 26.74 | 44.7 |
| Bra008509.1-P | Field mustard | cytosol | 28.55 | 44.68 |
| Bra001506.1-P | Field mustard | nucleus | 43.05 | 44.6 |
| TraesCS4B01G274500.2 | Wheat | plastid | 51.66 | 44.59 |
| CDY24182 | Canola | nucleus | 36.4 | 44.55 |
| CDX75712 | Canola | nucleus | 42.6 | 44.48 |
| CDY29972 | Canola | nucleus | 27.49 | 44.39 |
| CDY43989 | Canola | nucleus | 42.45 | 44.32 |
| Bra027432.1-P | Field mustard | nucleus | 42.3 | 44.16 |
| CDY52966 | Canola | cytosol | 29.76 | 43.97 |
| CDY23602 | Canola | nucleus | 41.39 | 43.91 |
| AT3G13460.1 | Thale cress | cytosol | 43.96 | 43.63 |
| CDY56132 | Canola | nucleus | 29.46 | 43.62 |
| CDX91541 | Canola | mitochondrion | 10.73 | 43.56 |
| AT3G03950.3 | Thale cress | cytosol | 28.1 | 43.46 |
| CDY07089 | Canola | nucleus | 41.69 | 43.4 |
| Bra039400.1-P | Field mustard | nucleus | 41.09 | 42.77 |
| TraesCS5B01G433000.1 | Wheat | cytosol | 37.61 | 41.78 |
| AT5G61020.1 | Thale cress | cytosol | 30.66 | 41.01 |
| KRG94807 | Soybean | nucleus | 40.03 | 40.21 |
| KRH70155 | Soybean | nucleus | 37.61 | 39.52 |
| KRH06717 | Soybean | nucleus | 38.97 | 38.91 |
| Bra018951.1-P | Field mustard | cytosol | 14.95 | 38.22 |
| TraesCS5B01G432900.2 | Wheat | extracellular | 37.16 | 37.96 |
| Bra014253.1-P | Field mustard | cytosol | 16.77 | 37.25 |
| Bra038524.1-P | Field mustard | cytosol | 12.39 | 36.44 |
| TraesCS1B01G057800.3 | Wheat | nucleus | 31.27 | 32.24 |
| TraesCS7B01G174500.1 | Wheat | nucleus | 28.85 | 31.89 |
| TraesCS7B01G182100.2 | Wheat | cytosol | 28.4 | 31.76 |
| TraesCS3B01G301100.1 | Wheat | nucleus | 29.15 | 28.05 |
| TraesCS4B01G179100.3 | Wheat | cytosol, nucleus, plastid | 28.4 | 26.33 |
| TraesCS2B01G010200.1 | Wheat | cytosol | 26.43 | 24.51 |
| TraesCS3B01G232300.2 | Wheat | cytosol | 23.57 | 22.71 |
| TraesCS1B01G128700.1 | Wheat | cytosol | 20.85 | 19.63 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G391500.1 | EnsemblPlantsGene:TraesCS5B01G391500 | Gene3D:3.10.590.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR007275 | InterPro:YTH_domain | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF38 | PFAM:PF04146 |
| PFscan:PS50882 | SEG:seg | MapMan:16.5.2.1 | : | : | : |
Description
No Description!
Coordinates
chr5B:+:570890411..570894877
Molecular Weight (calculated)
71755.3 Da
IEP (calculated)
8.799
GRAVY (calculated)
-0.858
Length
662 amino acids
Sequence
(BLAST)
(BLAST)
001: MVYGSANAGN AQGAGLHVDM QKLSLEGKKD AAGADAAKPS GMQYGSANTG NSQTVEPHVD RSITPLLQEA MDPNFFYQPN GYPSPAYYYP SGYDGSTNEW
101: DTRYAGHEGM EVPQQSVYGD MYHGYGYAPY GPYPSGSPVP TVGHDGQSYG TQQYQYPGQY YQQPAPTNAM HGINSANPQS ELPSAAAHQT RATVVSAKVT
201: TGTATGIANA ASSLPRKQTH HHVSVTNSGS YGRGPSQGGP SASNFGHTGH RSPAQWYDGP VYSNGHQRSI ASSTSYGSNS SSAKNQSHRP TTNLMGMHTH
301: GPSSGMGLTS PSYSSRMYPD SRLYGQYGQY GNTLKAGLGF GSNVYNSRNN GQWGVVDTVK YKPRNRATFG FGSENQDGFT ELNRGPRSGG FRHQKPFGPT
401: VTIAVKGQVL PSAGKQENSV LPDKSQFNQE GFSATYKDAK FFVIKSYSED DVHKSIKYNV WASTPNGNKK LDAGYREAQE KSSECPVFLF FSVNTSGQFV
501: GVAEMVGPVD FDKTVDYWQQ DKWNGCFSIK WHIVKDIPNN ILKHITLDNN DNKPVTNSRD TQEVKLEQGL QMLKIFKEHV SKTSILDDFA FYENRQKLMQ
601: EKRAKQQPLQ GQGGDEKEKN TANGNSTAQK QTPSKESTAP AAGEEPNASK PTTAESGGAS AN
101: DTRYAGHEGM EVPQQSVYGD MYHGYGYAPY GPYPSGSPVP TVGHDGQSYG TQQYQYPGQY YQQPAPTNAM HGINSANPQS ELPSAAAHQT RATVVSAKVT
201: TGTATGIANA ASSLPRKQTH HHVSVTNSGS YGRGPSQGGP SASNFGHTGH RSPAQWYDGP VYSNGHQRSI ASSTSYGSNS SSAKNQSHRP TTNLMGMHTH
301: GPSSGMGLTS PSYSSRMYPD SRLYGQYGQY GNTLKAGLGF GSNVYNSRNN GQWGVVDTVK YKPRNRATFG FGSENQDGFT ELNRGPRSGG FRHQKPFGPT
401: VTIAVKGQVL PSAGKQENSV LPDKSQFNQE GFSATYKDAK FFVIKSYSED DVHKSIKYNV WASTPNGNKK LDAGYREAQE KSSECPVFLF FSVNTSGQFV
501: GVAEMVGPVD FDKTVDYWQQ DKWNGCFSIK WHIVKDIPNN ILKHITLDNN DNKPVTNSRD TQEVKLEQGL QMLKIFKEHV SKTSILDDFA FYENRQKLMQ
601: EKRAKQQPLQ GQGGDEKEKN TANGNSTAQK QTPSKESTAP AAGEEPNASK PTTAESGGAS AN
001: MSTVAPPADQ AADVLKKLSL DSKSRTLEIP EPTKKTGVYQ YGAMDSNGQV PSFDRSLSPM LPSDALDPSV FYVPNVYQQP YYYGYGSDYT GYTNSESVDM
101: TSGYGYAAFP YSPATSPAPQ LGGDGQLYGA QQYQYPFPLT ASSGPFASSV PASTQSKLST NKAANSASAG IPKGMNGSAP VKPLNQSALY GNSALGGGLA
201: AGYQDPRYSY DGFYTPVSWH DGSNFSDVQR SVSGSGVASS YSKANNNVPA TRNQNSSSNS HYTSMYQPAS MTGYAAQGYY DRVSPNKSYG QYGSTVRSGM
301: GYGSSGYGSR TNERGWLNTD NKYRSRGRGN SYFYGNENID GLNELNRGPR AKGTKATEEV SSEEVKKQTF DESNTEETVT CVLPDREECN RDDFPVEYKD
401: AKFFIIKSYS EDDVHKSIKY NVWASTPNGN KKLDAAYQEA QQKSSGCPVF LFFSVNASGQ FIGLAEMKGP VDFNKNIEYW QQDKWTGSFP LKWHILKDVP
501: NSLLKHITLE YNENKPVTNS RDTQEVKLEQ GLKVVKIFKE HNSKTCILDD FSFYEARQKT ILEKKAKQQQ SQKQVWEGKT NDEKPGTVDS TM
101: TSGYGYAAFP YSPATSPAPQ LGGDGQLYGA QQYQYPFPLT ASSGPFASSV PASTQSKLST NKAANSASAG IPKGMNGSAP VKPLNQSALY GNSALGGGLA
201: AGYQDPRYSY DGFYTPVSWH DGSNFSDVQR SVSGSGVASS YSKANNNVPA TRNQNSSSNS HYTSMYQPAS MTGYAAQGYY DRVSPNKSYG QYGSTVRSGM
301: GYGSSGYGSR TNERGWLNTD NKYRSRGRGN SYFYGNENID GLNELNRGPR AKGTKATEEV SSEEVKKQTF DESNTEETVT CVLPDREECN RDDFPVEYKD
401: AKFFIIKSYS EDDVHKSIKY NVWASTPNGN KKLDAAYQEA QQKSSGCPVF LFFSVNASGQ FIGLAEMKGP VDFNKNIEYW QQDKWTGSFP LKWHILKDVP
501: NSLLKHITLE YNENKPVTNS RDTQEVKLEQ GLKVVKIFKE HNSKTCILDD FSFYEARQKT ILEKKAKQQQ SQKQVWEGKT NDEKPGTVDS TM
Arabidopsis Description
ECT4evolutionarily conserved C-terminal region 4 [Source:TAIR;Acc:AT1G55500]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.